Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0623 ATGTCTACTCAGAAGCTTTTCTCAGCTTTGTTTCTTCAACTAATCCTTGCCATTTTCGTCCTAGACGTTGCCGATGCGCAGTACTTGAAGCTCGGGTTCTACAAGAACACATGCCCAGCAGCTGAGGACATTGTCCGAGAGACTACAGCTCAATACATTTCAAAAGCACCAACTCTTGCAGCTTCCTTGCTGAGAATACATTTTCATGACTGTTTTGTCAGGGGTTGCGATGGATCAGTCTTATTGAACTCTACAAAGCATAATCAAGCTGAAAAGGATGCAATCCCCAACCTAAGCCTCAGAGGCTACCAAGTTATTGATGCAGCAAAATCTGCAGTGGAAAAGAAGTGTCCAGGAGTGGTTTCTTGTGCTGACATCCTAGCCCTAGTAGCTCGAGATGCAGTTTCAATGATCAATGGACCATATTGGCAAGTCCCCACTGGAAGAAGGGATGGAAAATTATCAGTTGCCTTGGAGGCCTTAACAAATTTGCCTCCTCCTTTCGCCAACATTACTCAACTAAAAGCAATGTTCCAGTCAAAGGGTCTGTCTATAAAAGACCTAGCAGTTCTATCAGGTGGACACACAATTGGGATCTCTCACTGTTCATCCTTCACCAACCGCCTTTACAACTTCACTGGGAAAGGTGACACTGACCCTTCCATGGATCCCAACTATGTGATCCAATTGAAGAAGAAATGCAAGCCAGGAGATGTTTCTACAGTTGTGGAGATGGACCCCGGAAGCTTCAAATCATTTGATGAAGACTACTACTCTGTTGTAGCTAAAAGGAGGGGCCTTTTCCAATCCGATGCAGCTCTTCTTGATGATGTTGAGACTAGCAAATATGTGAGACTTCAGTCTTTTTCCCATGGAAAATCTTTTGGGCGAGACTTTGCAGCATCCATGGTCAAAATGGGCAGGATTGGAGTGCTCACTGGGAATGCAGGTGAAATCAGGAAATACTGTGCCTTTCCTATAAATCTTGCTACAACTGTGACAACAGACAGAAGAAACGTAAACATGGAGAGGATTAGCCTTTTGGGGATTGTAATCTTGGGTTTTGCTGGGATTTTGGGTTCAGTTCAAGCTGATTTGAAGCTGGGTTTTTATGGTGAGAGCTGCCCTAAAGCTGAGAAAATTGTGTTGGACTATGTCAAGAAGCATATCCCAAATGCCCCATCTTTGGCAGCAGCCCTTATCAGAATGCACTTCCATGATTGTTTTGTGAGGGGTTGTGATGGATCAGTTCTGATAAACTCCACCTCAAGCAACCAAGCTGAGAAGGATGGTACTCCAAATCTAACCCTAAGAGGCTTTGACTTCATTGAAAGAGTGAAGAGTGTGGTTGAAGCTGAATGCCCCGGCATAGTCTCCTGTGCAGACATCCTTGCTTTAGTGGCCAGAGACTCCATTGTTGTCACTGGTGGTCCATTCTGGAACGTCCCAACTGGTAGAAGGGACGGACTGATATCAAATTCATCAGAGGCAGTATCCGATATCCCGCGGCCAGTTAACAACTTCACTACTCTCCAGACATTGTTTGCCAATAAGGGTCTTGACTTAAACGATCTAGTTTTACTGTCCGGTGCTCATACTATTGGGGTTTCTCACTGTTCATCGTTCTCCAACCGACTGTATAATTTTACTGGGGTTGGCGATGAGGACCCGGCTTTGGACAGCGAATATGCAGCAAATCTCAAGGCAAGAAAGTGTAAAGTAGCTACTGATAATACCACAATAGTTGAGATGGATCCGGGAAGTTTTAGGACATTTGATCTTAGCTACTACACCCTTCTGCTCAAGCGACGGGGACTATTCGAATCAGATGCGGCTTTGACGACAAACTCTGGGACAAAGGCTTTTATCACTCAAATCCTTCAAGGGCCCCTGTCGAGTTTCTTGGCTGAATTTGCAAAATCAATGGAGAAGATGGGTCGGATCGAGGTGAAGACTGGAACAGCAGGCGAGGTCAGGAAGCAGTGTGCAGGGGGCCCCTTTTCTGCTAGGGAGAAGCAGCATTGGACATGTAGCAAAGGGGGAATGGCAGCCATGAAGGTGGTTGAAGAGGCCATGCTTGCTGATGGGGGAACAGGAGGGCAAGTGGTGGCTTGCTAA 2118 0.4589 MSTQKLFSALFLQLILAIFVLDVADAQYLKLGFYKNTCPAAEDIVRETTAQYISKAPTLAASLLRIHFHDCFVRGCDGSVLLNSTKHNQAEKDAIPNLSLRGYQVIDAAKSAVEKKCPGVVSCADILALVARDAVSMINGPYWQVPTGRRDGKLSVALEALTNLPPPFANITQLKAMFQSKGLSIKDLAVLSGGHTIGISHCSSFTNRLYNFTGKGDTDPSMDPNYVIQLKKKCKPGDVSTVVEMDPGSFKSFDEDYYSVVAKRRGLFQSDAALLDDVETSKYVRLQSFSHGKSFGRDFAASMVKMGRIGVLTGNAGEIRKYCAFPINLATTVTTDRRNVNMERISLLGIVILGFAGILGSVQADLKLGFYGESCPKAEKIVLDYVKKHIPNAPSLAAALIRMHFHDCFVRGCDGSVLINSTSSNQAEKDGTPNLTLRGFDFIERVKSVVEAECPGIVSCADILALVARDSIVVTGGPFWNVPTGRRDGLISNSSEAVSDIPRPVNNFTTLQTLFANKGLDLNDLVLLSGAHTIGVSHCSSFSNRLYNFTGVGDEDPALDSEYAANLKARKCKVATDNTTIVEMDPGSFRTFDLSYYTLLLKRRGLFESDAALTTNSGTKAFITQILQGPLSSFLAEFAKSMEKMGRIEVKTGTAGEVRKQCAGGPFSAREKQHWTCSKGGMAAMKVVEEAMLADGGTGGQVVAC* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0623 705 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 Gene3D - 32 324 - -
Vvi12g0623 705 ProSitePatterns Peroxidases active site signature. 397 408 IPR019794 GO:0004601
Vvi12g0623 705 PANTHER PEROXIDASE 25-RELATED 16 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 SUPERFAMILY Heme-dependent peroxidases 29 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 FunFam Peroxidase 32 175 - -
Vvi12g0623 705 SUPERFAMILY Heme-dependent peroxidases 366 662 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vvi12g0623 705 CDD secretory_peroxidase 29 325 IPR033905 GO:0004601|GO:0042744
Vvi12g0623 705 ProSiteProfiles Plant heme peroxidase family profile. 28 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Vvi12g0623 705 CDD secretory_peroxidase 366 662 IPR033905 GO:0004601|GO:0042744
Vvi12g0623 705 Gene3D Peroxidase, domain 2 502 645 - -
Vvi12g0623 705 ProSiteProfiles Plant heme peroxidase family profile. 365 662 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Haem peroxidase superfamily signature 476 488 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Haem peroxidase superfamily signature 524 539 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Haem peroxidase superfamily signature 397 411 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Haem peroxidase superfamily signature 458 475 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 PRINTS Haem peroxidase superfamily signature 585 600 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 FunFam Peroxidase 369 512 - -
Vvi12g0623 705 FunFam Peroxidase 165 306 - -
Vvi12g0623 705 Pfam Peroxidase 45 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 Pfam Peroxidase 386 626 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0623 705 Gene3D Peroxidase, domain 2 165 306 - -
Vvi12g0623 705 FunFam Peroxidase 502 645 - -
Vvi12g0623 705 Gene3D - 370 663 - -
Vvi12g0623 705 ProSitePatterns Peroxidases proximal heme-ligand signature. 524 534 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0623 Vvi-Chr12 7190505 7199637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0623 355 663 Peroxidase AT1G05260 72.816 1.50e-166 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0623 - K00430 egu:105052151 876.7