Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0622 ATGTCTTCTCAAAAGCTCTTCTCAGCTTTCTTTCTCCAAGTGATCCTTGCCACTTTGGTCTTAGGCGTGGCAAATGTGCAGTGCTTGAAACTTGGTTTCTACAAGAAAACATGTCCTGCAGCTGAGGATATCGTGCGAAAGACTACGGCCCAATACATTTCAAAAGCACCAACTCTTGCAGCTCCTTTGCTGAGAATGCATTTTCATGACTGTTTTGTTAGGGGATGCGATGGTTCGGTTCTATTGAATTCAACAAAGAATAACCAAGCTGAAAAGGATGCAATCCCCAACCTAAGCCTCAGAGGTTACCATGTTATCGATGCAGCAAAATCTGCAGTGGAAAAGAAGTGTCCAGGAGTGGTTTCTTGTGCTGACATCCTAGCCCTTGTAGCTAGAGATGCAGTTTCAATGATCAATGGACCGTATTGGAAAGTCCCTACAGGTAGAAGGGATGGAAAAGTATCAGTTGCCTTGGAGGCCTTAATAAATTTGCCACCTCCTTTCGCCAACATTACTCAACTAAAATCAATGTTCCACTCAAAGGGTCTGTCTGTAAAAGACCTAGTAGTTCTATCAGGTGGACACACAATTGGGATCTCTCACTGTTCATCCTTCACCAACCGCCTATACAACTTCACTGGAAAAGGTGACACTGACCCCTCCATGGATCCCAACTATGTGATTCAGTTGAAGAAGAAATGCAGGCCGGGAGACGTTACTACAATAGTAGAGATGGACCCTGGAAGCTTCAAAACATTCGATGGAGACTATTACACTATGGTGGCTAAGAGAAGAGGCCTTTTCCAATCTGATGTAGCTCTTCTTGATGATGTTCAGACTAGAAAATATGTAAAACTTCACTCATTTTCCCATGGAAAGAGTTTTGGGAAAGATTTTGCAGCATCCATGGTCAAAATGGGAAAGGTTGGAGTGCTGACAGGCAAGGCGGGTGGAATCAGGAAATACTGTGCTTTTGTCAATAAATAA 987 0.4326 MSSQKLFSAFFLQVILATLVLGVANVQCLKLGFYKKTCPAAEDIVRKTTAQYISKAPTLAAPLLRMHFHDCFVRGCDGSVLLNSTKNNQAEKDAIPNLSLRGYHVIDAAKSAVEKKCPGVVSCADILALVARDAVSMINGPYWKVPTGRRDGKVSVALEALINLPPPFANITQLKSMFHSKGLSVKDLVVLSGGHTIGISHCSSFTNRLYNFTGKGDTDPSMDPNYVIQLKKKCRPGDVTTIVEMDPGSFKTFDGDYYTMVAKRRGLFQSDVALLDDVQTRKYVKLHSFSHGKSFGKDFAASMVKMGKVGVLTGKAGGIRKYCAFVNK* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0622 328 FunFam Peroxidase 165 306 - -
Vvi12g0622 328 Pfam Peroxidase 45 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 SUPERFAMILY Heme-dependent peroxidases 29 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 CDD secretory_peroxidase 29 326 IPR033905 GO:0004601|GO:0042744
Vvi12g0622 328 Gene3D Peroxidase, domain 2 165 306 - -
Vvi12g0622 328 Gene3D - 32 327 - -
Vvi12g0622 328 FunFam Peroxidase 32 175 - -
Vvi12g0622 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vvi12g0622 328 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 ProSiteProfiles Plant heme peroxidase family profile. 28 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PANTHER PEROXIDASE 25-RELATED 18 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Vvi12g0622 328 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g0622 328 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0622 Vvi-Chr12 7187086 7188352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0622 2 327 Peroxidase AT3G01190 62.883 1.66e-146 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0622 K00430 - vvi:100260174 660.603