Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0621 ATGCGGGTCATTATCACTACACGAACATGCGAATTTTCCATAGACATAGGCCTCCAAGAACCAGTTTTGGAAATCAAACACAAGATAGAGCAACTCCATGGGGTTCCAGTGGCTCTACAAACCCTGTCAGTATCCGGGTGGGAGCTCATGGATGGACTGGACATGGAAGATTACCCCATTGTCACTGAAGGTACAAGAATTGATCTCATGACCAAACATATAGAGCACTACCCTTTAGCTCGCTGTAGTAAAATTCAAATCATCATTAAGTTCTCAGCTAGACAAATTAGTATAGAAGTGGACAGAACTGAAACTGTGGGAAGCCTAAAAGAGAAAATCCATATAATTGAAGGCACCCCAATTAAAAGAATGATACTATACTTTTCTGGTACAGAGATGGAAGAGGACTTTCGCAATTTAAGTGAGTACGGCATACGGGAATTTTCTGAAATTATTGTGTTCCTCAAGGCTCTGAATCGCACAAGGGACCAACCTCCCGTTAGAAAGCTCAATGTGGTGGTTCAAACTTCTTCAAGTTTGCTTAATTCTGCTTGCATACCATTGGAACTGAGAGACATGGACACGGTTCATGAGCTGAGACAACTGCTTCTGGCCCGAAAAATTCTTCCTAGGGATGATTATTTGTTCATTCACAAACAAAGAATTATGCGCGATAATTGCAGTCTTCGATGGCATGGTGTTGAAGATGGGGATTCACTGTACGTATTCAGAGGCACAGTGAGTCGAAATGGATTTTGA 759 0.419 MRVIITTRTCEFSIDIGLQEPVLEIKHKIEQLHGVPVALQTLSVSGWELMDGLDMEDYPIVTEGTRIDLMTKHIEHYPLARCSKIQIIIKFSARQISIEVDRTETVGSLKEKIHIIEGTPIKRMILYFSGTEMEEDFRNLSEYGIREFSEIIVFLKALNRTRDQPPVRKLNVVVQTSSSLLNSACIPLELRDMDTVHELRQLLLARKILPRDDYLFIHKQRIMRDNCSLRWHGVEDGDSLYVFRGTVSRNGF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0621 252 SUPERFAMILY Ubiquitin-like 1 73 IPR029071 -
Vvi12g0621 252 CDD Ubl_ubiquitin_like 11 70 - -
Vvi12g0621 252 SUPERFAMILY Ubiquitin-like 181 245 IPR029071 -
Vvi12g0621 252 SMART ubq_7 168 245 IPR000626 GO:0005515
Vvi12g0621 252 SMART ubq_7 85 156 IPR000626 GO:0005515
Vvi12g0621 252 SMART ubq_7 1 72 IPR000626 GO:0005515
Vvi12g0621 252 Gene3D - 158 248 - -
Vvi12g0621 252 ProSiteProfiles Ubiquitin domain profile. 85 156 IPR000626 GO:0005515
Vvi12g0621 252 Gene3D - 84 156 - -
Vvi12g0621 252 ProSiteProfiles Ubiquitin domain profile. 170 242 IPR000626 GO:0005515
Vvi12g0621 252 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Vvi12g0621 252 Pfam Ubiquitin family 9 72 IPR000626 GO:0005515
Vvi12g0621 252 Pfam Ubiquitin family 87 156 IPR000626 GO:0005515
Vvi12g0621 252 CDD Ubl_ubiquitin_like 87 154 - -
Vvi12g0621 252 CDD Ubl_ubiquitin_like 180 243 - -
Vvi12g0621 252 Gene3D - 1 72 - -
Vvi12g0621 252 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 72 - -
Vvi12g0621 252 SUPERFAMILY Ubiquitin-like 76 158 IPR029071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0621 85 156 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.877 2.27e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0621 - - vvi:100243083 501.901