Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0618 ATGTCTGAACTCGACGCAAATATTCCAACCACTTTTGACCCTTTTGCTGATGCAAATGCTGAGGACTCGGGCGCGGGGACAAAAGAGTACGTCCATGTGCGTATCCAGCAGCGTAATGGGAGGAAAAGCCTGACTACCGTGCAAGGGTTGAAGAAGGAATTCAGCTACAACAAGATTCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAATGGCACTGTTGTCCAGGACCCTGAGCTAGGCCAGGGTGATCAAAGGAAGAATGTTTCCACATTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAAAACATCAAGATCCATGGTTTTTGA 327 0.4832 MSELDANIPTTFDPFADANAEDSGAGTKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQGDQRKNVSTFLVQAGIVKKENIKIHGF* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0618 108 Pfam Translation initiation factor SUI1 28 97 IPR001950 GO:0003743|GO:0006413
Vvi12g0618 108 Gene3D - 2 108 - -
Vvi12g0618 108 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 6 108 - -
Vvi12g0618 108 FunFam Eukaryotic translation initiation factor SUI1 2 108 - -
Vvi12g0618 108 NCBIfam translation initiation factor SUI1 8 108 IPR005874 GO:0003743
Vvi12g0618 108 MobiDBLite consensus disorder prediction 1 23 - -
Vvi12g0618 108 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 96 IPR001950 GO:0003743|GO:0006413
Vvi12g0618 108 CDD eIF1_SUI1 29 107 IPR005874 GO:0003743
Vvi12g0618 108 PIRSF Transl_init_SUI1_Euk 1 108 IPR005874 GO:0003743
Vvi12g0618 108 SUPERFAMILY eIF1-like 6 108 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0618 Vvi-Chr12 7163296 7164322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0618 1 108 Eukaryotic Initiation Factors Gene Family AT4G27130 85.841 2.40e-70 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0618 K03113 - vvi:100243115 214.542