Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0617 ATGTGTTTTTATGGGTATTTTCTATCAAAAATGTGGTTTTGCCTTCTGGGTCTCTCTGTTTTTCTATTGGGTGCCCTGCTTCATAAATTCCCACATCATAGCTCTCTGAATTCTAGAGAGGGAAGCAGTCAAGATTCCAAGCTTGAATTCTCTGAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAGGTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGAGAAGTACTGGACTTCAAGATATTCATCAAGTGAATGA 291 0.4158 MCFYGYFLSKMWFCLLGLSVFLLGALLHKFPHHSSLNSREGSSQDSKLEFSEDEETLITRMFNLVGERWSLIAGRIPGRTAEEIEKYWTSRYSSSE* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0617 96 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 49 93 - -
Vvi12g0617 96 SMART sant 46 94 IPR001005 -
Vvi12g0617 96 ProSiteProfiles Myb-like domain profile. 42 92 IPR001005 -
Vvi12g0617 96 SUPERFAMILY Homeodomain-like 49 92 IPR009057 -
Vvi12g0617 96 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 96 IPR017930 -
Vvi12g0617 96 Gene3D - 49 91 - -
Vvi12g0617 96 FunFam MYB-like transcription factor 49 91 - -
Vvi12g0617 96 CDD SANT 49 88 IPR001005 -
Vvi12g0617 96 Pfam Myb-like DNA-binding domain 49 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0617 Vvi-Chr12 7147812 7148359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0617 49 90 MYB Transcription Factor Family AT5G35550 61.905 3.06e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi12g0617 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0617 - - vvi:100246481 196.823