Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0615 ATGAACGACCTGCTCACGGATTCATTTGTTGGAGATGCCAAAGTTCAGCCTCCCAAAGAAAGAGACATCGAAATGGGAACCCGGGTTCTGAGGACTAACTCAGATTTGGGATTGGAAGCTTTCAATAAGCAGATACAAGAGGTTGAGAAGCAGGTGGATAAGCTCACATTCTTACTCAAGAAACTTAAGGATGCTAACGAGGAGTCGAAGTCTGTTACCAAAGCGTCTGCCATGAAAGAAATCAAGAAGCGGTTGGAGAAAGATGTTGATGAAGTGGGAAAGATAGCACAAAATGTCAAAGCAAAACTAGAAGCAATAAACAGAGATAACTTAGCCAATCGAAAAAAGCCTGGCTGTGAAAAGGGAACAGGTGTTGATCGATCAAGGAAAAACATGACAAATGCATTGACAAAGAAGTTCAAGGACCTAATGATAGACTTTCAGGCCCTCAGACAAAAGATGCAAGATGAGTACCGCGAGGTTGTGGAGAGAAGGGTCATGACAGTTACTGGAACCAGACCAGATGAAGAGACAATAGACAACCTGATAGAAACTGGAAACAGCGAGCAAATCTTCCAGAAGGCAATTCAAGAGATGGGTAGAGGACAGGTGCTGGCCACACTGGAAGAAATTCAGGAAAGACATGACACTGTGAAGGAAATTGAGAAGAAGCTCCTTGACTTGCATCAGATTTACCTTGATATGGCTGTTCTAGTGGAAGCCCAAGGAGACCTGTTAAATAACATTGAAAACCAGGTGACAAATGCAGTGGACCATGTGCAATGGGGAACAGATGCTCTCAGAACAGCAAAGAGCTTGCAAAAGAAGTCAAGAAAATGCATGATGTTTGCCATCATCCTCATCTTGATTATTGCAGCCATTATCACTCTTTCTGTCCTGAAACCTTGGAAATAG 915 0.4295 MNDLLTDSFVGDAKVQPPKERDIEMGTRVLRTNSDLGLEAFNKQIQEVEKQVDKLTFLLKKLKDANEESKSVTKASAMKEIKKRLEKDVDEVGKIAQNVKAKLEAINRDNLANRKKPGCEKGTGVDRSRKNMTNALTKKFKDLMIDFQALRQKMQDEYREVVERRVMTVTGTRPDEETIDNLIETGNSEQIFQKAIQEMGRGQVLATLEEIQERHDTVKEIEKKLLDLHQIYLDMAVLVEAQGDLLNNIENQVTNAVDHVQWGTDALRTAKSLQKKSRKCMMFAIILILIIAAIITLSVLKPWK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0615 304 CDD SNARE_syntaxin1-like 207 269 - -
Vvi12g0615 304 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Vvi12g0615 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Vvi12g0615 304 Gene3D - 34 162 - -
Vvi12g0615 304 SMART SynN_4 33 159 IPR006011 GO:0016020
Vvi12g0615 304 Gene3D - 199 301 - -
Vvi12g0615 304 SUPERFAMILY t-snare proteins 36 263 IPR010989 GO:0016020|GO:0016192
Vvi12g0615 304 PANTHER SYNTAXIN 37 291 IPR045242 -
Vvi12g0615 304 Coils Coil 82 102 - -
Vvi12g0615 304 Coils Coil 38 68 - -
Vvi12g0615 304 Pfam SNARE domain 245 295 IPR000727 -
Vvi12g0615 304 CDD SynN 38 195 IPR006011 GO:0016020
Vvi12g0615 304 SMART tSNARE_6 203 270 IPR000727 -
Vvi12g0615 304 FunFam Syntaxin 132 201 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0615 Vvi-Chr12 7133958 7137097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0615 1 303 SNARE and Associated Proteins AT3G03800 59.736 3.64e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0615 K08486 - vvi:100251625 568.155