Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0612 ATGCCGGCAGGAATTATGATTCCGGCGACCCATATGCCGTCAATGATGGGAAGAAATGGGAATGTTGCTGCTTATGGATCTTCCTCAGGACTCAGTCTTGGCCAGCCAAATATGATGGACGGCCAGCTTCACCCACTCGACATGACTCAAAACACATCGGAAAGTGAAATCGCCAGGCTCAGAGAGGATGATTTTGACAGCAAATCTGGCAGTGAAAACCATGAAGGTGCCTCCGGAGATGACCAAGATCCCAACCAACGCCCCAAGAAGAAGCGCTACCATCGCCACACTCAGCATCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGCTGAGCCGTGAATTAGGGTTAGAGCCCTTGCAGGTCAAATTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACCCAGCATGAGCGCCATGAGAACACACAGCTTCGCAGCGAGAATGAAAAGCTCCGTACAGAGAATTTGAGGTACCGGGAAGCTCTGAGCAACGCTTCCTGTCCTAATTGCGGAGGCCCGACTGCTATAGGAGAGATGTCATTTGATGAACATCATCTGAGATTGGAGAATGCTAGGTTGAGGGAAGAGATTGATCGGATCTCGGCAATTGCTGCAAAGTATGTTGGCAAACCAGTAGTGAACTATCCTCTTATTCCTCAGGTTCCCACCCGTCCCCTCGATCTAGGGGTTGGAAACTTTGGGGCACAGCCAGGATTAGGAGGCGAGCTGTTTGGAGCCAGTGACCTTCTTAGGTCAATCAATGGACCGACTGAAGCTGACAAACCAATGATAATTGAGCTTGCAGTTGCAGCTATGGAGGAGCTATTCCGAATGGCTCAGATGGGGGAACCCTTGTGGCTTCCAAGCCTTGATGGCACAACCACCGAACTAAGCGAAGATGAATATATCAGGTCATTCCCAAGGGGAATTGGACCAAAACCTCCAGGATTTAAGTGTGAAGCCTCGCGAGAAACCGCTGTCGTTATCATGAACCATATTAGCCTGGTTGAGATTCTCATGGATGTGAACCAGTGGTCTACCGTGTTTTCCGGCATTGTTTCAAGAGCTATGACCCTGGAAGTACTATCAACTGGAGTTGCAGGGAACTATAACGGAGCCTTTCAAGTGATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGGTTGACGTTTCCTTGGACAATTTACGTCCTAGTCCGGTGGTGAGATGTCGAAGAAGGCCATCTGGATGTTTAATACAAGAAATGCCTAATGGATATTCAAAGGTTACATGGGTTGAGCATGTTGAAGTTGATGATCGAGGTGTTCATAATATATATAAGCAGTTAGTTAACTCTGGTCTTGCATTTGGGGCGAAAAGATGGGTCGCTACTTTAGACCGCCAATGCGAGCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTGTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATGGACGACCCTATCTGGAAGTGGCGCTGATGATGTTAGGGTTATGACCCGGAAGAGCGTGGACGATCCAGGCAGGCCTCCTGGGATTGTGCTAAGTGCTGCTACTTCATTCTGGCTTCCAGTTCCGCCAAAGAGAGTATTTGATTTTCTCCGTGATGAGAATTCTCGCAGCGAGTGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTGCAAGAAAGCTGTACTGATTCAACAGCCTCTTTCGTGATTTATGCTCCTGTCGATGTTGTTGCCATGAACATGGTACTGAATGGAGGGGATCCAGACTATGTTGCTCTTCTTCCCTCAGGATTTGCAATTCTTCCAGATGGAACCACAGCTCATGGAGGAGTCATAGGTGAAGTTGGGTCTGGAGGATCTCTTCTAACCGTGGCATTTCAGATATTGGTTGATTCGGTTCCAACGGCAAAACTCTCTCTAGGGTCGGTTGCGACTGTTAACAATCTCATCGCTTGCACTGTCGACAGGATTAAGGCTGCAGTCTCGTGTGAGAACGCATGA 2274 0.478 MPAGIMIPATHMPSMMGRNGNVAAYGSSSGLSLGQPNMMDGQLHPLDMTQNTSESEIARLREDDFDSKSGSENHEGASGDDQDPNQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRTENLRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLIPQVPTRPLDLGVGNFGAQPGLGGELFGASDLLRSINGPTEADKPMIIELAVAAMEELFRMAQMGEPLWLPSLDGTTTELSEDEYIRSFPRGIGPKPPGFKCEASRETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGAFQVMTAEFQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPVVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNIYKQLVNSGLAFGAKRWVATLDRQCERLASAMATNIPTGEVGVITSQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGSGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQSNMLILQESCTDSTASFVIYAPVDVVAMNMVLNGGDPDYVALLPSGFAILPDGTTAHGGVIGEVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVDRIKAAVSCENA* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0612 757 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Vvi12g0612 757 SMART HOX_1 88 151 IPR001356 GO:0003677
Vvi12g0612 757 FunFam Homeobox-leucine zipper protein GLABRA 2 278 497 - -
Vvi12g0612 757 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Vvi12g0612 757 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Vvi12g0612 757 SMART START_1 278 498 IPR002913 GO:0008289
Vvi12g0612 757 SUPERFAMILY Homeodomain-like 76 147 IPR009057 -
Vvi12g0612 757 MobiDBLite consensus disorder prediction 64 99 - -
Vvi12g0612 757 FunFam Homeobox-leucine zipper protein HDG1 78 163 - -
Vvi12g0612 757 MobiDBLite consensus disorder prediction 64 88 - -
Vvi12g0612 757 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Vvi12g0612 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 86 752 IPR042160 -
Vvi12g0612 757 CDD homeodomain 90 148 IPR001356 GO:0003677
Vvi12g0612 757 Coils Coil 146 173 - -
Vvi12g0612 757 Gene3D - 324 503 IPR023393 -
Vvi12g0612 757 CDD START_ArGLABRA2_like 273 497 - -
Vvi12g0612 757 SUPERFAMILY Bet v1-like 269 500 - -
Vvi12g0612 757 Gene3D - 76 164 - -
Vvi12g0612 757 SUPERFAMILY Bet v1-like 518 749 - -
Vvi12g0612 757 Pfam START domain 279 498 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0612 Vvi-Chr12 7102011 7106874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0612 35 757 Homeobox Transcription Factor Family AT1G05230 77.687 0.0 1163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi12g0612 START 1.1e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0612 K09338 - vvi:100261842 1442.17