Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0608 ATGGAAGTGAACTTGACTGCTGGGTCTGGTCGGGTTTTCATGGCAGGAGTGCTGCTGCTGATTTTTTGTATTTGGGTGCCCATACTGGGTAGGGCTCAAAATGCCAGTGTTTCTTCTTCAGCTGCAAATGTTGTGAATATTGGTGCCGTGTTTACTTTGAATTCATTCATTGGAAGAGCGGCACAGCCGGCGATTTTAGCTGCAATTGATGATGTTAACTCTGATTCGAGCATTCTTGAAGGGAGGAAACTGAACGTTATTTTTCAGGATACAAATTGCAGTGGATTTCTTGGAACAGTGGAAGCATTGCAGCTGATGGAGAAAGATGTGGTTGCCATAATCGGCCCACAATCATCTGGAATAGCTCATGTTATGTCCCATGTCGTAAATGAATTTCACATACCACTTCTGTCCTTTGGGGCGACAGATCCCACCCTCTCTGCACTGCAGTTCCCGTATTTCCTCCGCACTACACAGAGTGACTATTACCAAATGTATGCAATTGCTGATTTGGTTGATTTTTTTGAATGGAGAGAAGTAATTGCAATTTTTGTAGATGATGATTATGGAAGAAATGGGATTTCAGTATTGGGTGATGCCCTTGCTAAGAAGCGTGCCAAGATTTCTTATAAGGCTGCCTTCACACCTGGAGCCACCAAGAATGAAATCAGTGACTTGTTGGCTGGAGTGAACCTAATGGAATCTCGAGTTTTCGTTGTACATGTTAATCCTGACTCTGGCCTGTATATTTTCTCTGTTGCAAAGGTTCTTGGAATGTTGAACAATGGTTATGTTTGGATTGCCACAGACTGGCTTCCTTCTGTTTTAGATTCATCAGAAACGGTTGATCCTGATCAAATGAATCAATTACAAGGAGTTGTTGCACTTCGCCATCACATCCCTGATTCTGATCGCAAAAAGAGTTTTACATCTAGGTGGAACAAGTTGAAGAACAAGGGGATTTCCGGCCTGAACTCTTATGCTTTCTATGCTTATGATTCTGTTTCATTAGTTGCACATGCTCTTGATGTTTTTTTCAAAGAAGGTGGAAATATTTCTTTCTCTAGTGACCCAAAGTTGCACGACACAAATGGAAGCAAACTACAATTATCTACACTCCATACTTTTGATGGTGGCCAGAAATTACTCCAAACCCTAATTACAACAAACTTTACAGGTCTGAGTGGTCAGATTCAATTTGATTTGGAGAAGAATCTAATTCACCCAGCATATGATGTTCTCAACATTGGTGGAACTGGATTCCGCAGAATAGGTTATTGGTCAAATTATTCTGGTCTCTCAGTCATCACTCCAGAAATCTTATATACGAGGCCTCCAAACACTTCTTCTAGCAATCATCATCTTTACAGTGTTATATGGCCTGGTGAAATTACAGCAAAGCCTCGGGGATGGGTGTTCCCTAATAATGGGAAGCCACTGCGAATTGGGGTGCCTGACCGAGTAAGTTTTAAAGATTTTGTGGCGAGAGACAAGGGGCCCCTTGGGGTCAGAGGATATTGCATTGATATCTTTGAAGCTGCAGTAAACTTGCTGCCTTACGCAGTTCCACACACATATATGCTATATGGCAATGGTTTGAGAAATCCTAGCTACGATGATCTTGTGTCTCAGGTTGTGGGAAATAAATTTGATGCTGCTGTTGGGGACATCACAATTGTTACAAATAGAACAAGGATAGTGGATTTTACCCAGCCTTTCATGGAATCTGGACTCGTCATAGTTGCTACGGTGAAAGAGACAAAATCTAGCCCTTGGGCTTTCCTCAAGCCATTCACCGTGCAAATGTGGTGTGTTACTGGTGCCTTCTTTATTTTTGTAGGAGCAGTTGTTTGGATTCTTGAGCATCGTATAAATCAAGAATTCCGTGGTCCACCAAGCCAGCAACTCATTACCATCTTTTGGTTCAGTTTCTCCACAATGTTTTTCTCACACAGAGAGAACACAGTGAGCACCCTTGGACGTCTGGTGCTGATCATATGGTTATTTGTAGTGTTAATCATCAACTCAAGCTACACAGCTAGTTTGACATCAATCCTCACAGTACAGCAGCTGACATCACGGATTGAAGGAATTGATAGCTTGATCTCGAGTAATGATAAAATTGGAGTTCAAGATGGGTCCTTTGCATGGAATTATTTGATTGAAGAGCTCAACATACCAGTGTCTAGGCTTGTCCATTTAAAAGATCAGGAGGAATATGCTGATGCCCTCCGGTTGGGACCAAAAGAAGGTGGGGTAGCTGCCATTGTTGATGAGCTTCCTTACATTCAGGTCTTCTTGGCCAAACTGAACTGCGCCTTCAGGATTGTTGGACAGGAGTTTACAAAAAGTGGGTGGGGATTCGCATTCCAAAGGGATTCTCCTCTTGCAGTTGACTTGTCAACCGCCATTCTTCAGCTCTCAGAGAATGGTGAACTCCAAAGAATCCATGATAAATGGCTATCAAATAAGGAGTGCTCCTCGCAACTCAGCCAAGTTGATGAAAACCGACTCTCACTCTCAAGCTTCTGGGGCCTATTTCTCATTTCTGGCATTGCATGCTTTGTAGCTCTCACCGTATTCTTCTTTAGGACCTTTTGTCAATACCGCAGATATGGCCCAGAGGAGAAGGAGGAGGATGACAACGAGATTGATAGTCCAAGGCGGCCTCCCCGCCCTGGCTGCCTGGTTTTTATTGACAAGAAAGAAGAAGAGATCAAGGAGGCTCTTAAGCGGAAGGATTCAAAGCAACGGGCTAGCAATTCAACTCCTTAG 2775 0.431 MEVNLTAGSGRVFMAGVLLLIFCIWVPILGRAQNASVSSSAANVVNIGAVFTLNSFIGRAAQPAILAAIDDVNSDSSILEGRKLNVIFQDTNCSGFLGTVEALQLMEKDVVAIIGPQSSGIAHVMSHVVNEFHIPLLSFGATDPTLSALQFPYFLRTTQSDYYQMYAIADLVDFFEWREVIAIFVDDDYGRNGISVLGDALAKKRAKISYKAAFTPGATKNEISDLLAGVNLMESRVFVVHVNPDSGLYIFSVAKVLGMLNNGYVWIATDWLPSVLDSSETVDPDQMNQLQGVVALRHHIPDSDRKKSFTSRWNKLKNKGISGLNSYAFYAYDSVSLVAHALDVFFKEGGNISFSSDPKLHDTNGSKLQLSTLHTFDGGQKLLQTLITTNFTGLSGQIQFDLEKNLIHPAYDVLNIGGTGFRRIGYWSNYSGLSVITPEILYTRPPNTSSSNHHLYSVIWPGEITAKPRGWVFPNNGKPLRIGVPDRVSFKDFVARDKGPLGVRGYCIDIFEAAVNLLPYAVPHTYMLYGNGLRNPSYDDLVSQVVGNKFDAAVGDITIVTNRTRIVDFTQPFMESGLVIVATVKETKSSPWAFLKPFTVQMWCVTGAFFIFVGAVVWILEHRINQEFRGPPSQQLITIFWFSFSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSRIEGIDSLISSNDKIGVQDGSFAWNYLIEELNIPVSRLVHLKDQEEYADALRLGPKEGGVAAIVDELPYIQVFLAKLNCAFRIVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGELQRIHDKWLSNKECSSQLSQVDENRLSLSSFWGLFLISGIACFVALTVFFFRTFCQYRRYGPEEKEEDDNEIDSPRRPPRPGCLVFIDKKEEEIKEALKRKDSKQRASNSTP* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0608 924 Pfam Receptor family ligand binding region 61 417 IPR001828 -
Vvi12g0608 924 Pfam Bacterial extracellular solute-binding proteins, family 3 537 822 IPR001638 -
Vvi12g0608 924 FunFam Glutamate receptor 475 591 - -
Vvi12g0608 924 Gene3D - 64 408 - -
Vvi12g0608 924 CDD PBP1_GABAb_receptor_plant 46 435 IPR044440 -
Vvi12g0608 924 Gene3D - 160 433 - -
Vvi12g0608 924 SUPERFAMILY Periplasmic binding protein-like I 40 472 IPR028082 -
Vvi12g0608 924 Coils Coil 899 919 - -
Vvi12g0608 924 PIRSF IGluLR_plant 11 923 IPR017103 -
Vvi12g0608 924 Gene3D - 591 717 - -
Vvi12g0608 924 FunFam Glutamate receptor 717 825 - -
Vvi12g0608 924 Gene3D - 718 825 - -
Vvi12g0608 924 FunFam Glutamate receptor 160 324 - -
Vvi12g0608 924 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Vvi12g0608 924 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Vvi12g0608 924 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Vvi12g0608 924 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Vvi12g0608 924 MobiDBLite consensus disorder prediction 876 895 - -
Vvi12g0608 924 Gene3D - 474 590 - -
Vvi12g0608 924 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Vvi12g0608 924 Pfam Ligand-gated ion channel 823 854 IPR001320 GO:0015276|GO:0016020
Vvi12g0608 924 CDD GluR_Plant 478 821 - -
Vvi12g0608 924 FunFam Glutamate receptor 591 721 - -
Vvi12g0608 924 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 45 888 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0608 Vvi-Chr12 7067654 7072421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0608 45 788 Ion Channels AT1G05200 71.102 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0608 K05387 - vvi:100250030 1836.62