Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0607 ATGAGGCATGTTGTGGCTCTGCCGCTAGCTTTATGGGTATGGGTTATTTTTCATGGTTCTGTGCTCTGCCAGAGACCTGCAGTTGTGAATATTGGTGCAGTTTTCACCTTTGATTCAGTTATCGGCAGACCGGCGAAAGTGGCTATGAAAGTTGCAGTTTCTGATGTTAATTCAGATCCAAGAATTCTCAATGGAACTGAACTGAACCTAATCATGGGGGATGCAAAGTGTAGTGTGTTCATGGGCTGTATTGCTGCATTTCAGGTACTTGAGAGACAAGTACTGGCTATAATTGGGCCACAGTCCTCCTCAATAGCTCATATGATTTCTCAGATTGCTAACGGTCTCCAAGTGCCTCAAATCTCATATGCTGCCACTGATCCGACTCTCTCTGCCCTCCAATTTCCTTTCTTTCTTCGTACCACACATAGTGACTCGTATCAAATGGCTGCAATGGCTGATTTGATTGACTATTATGGGTGGAAGGAAGTTATTGTAATTTTTGTGGATGATGATTATGGGAGGAATGGAATGGCTGCTTTAGACGATGAGCTTGAGAAAAGAGGGTCAAAGATTTCTTACAAGTTGCCTTTGCCTACTGAATTCAATGTCAGGGACTTCACTGAAATGCTCAATAAGTCCAAATTGATTGGACCTCGAGTTTATGTTGTTCATGTTAACCCTGATCCCAGTTTTAGAATCTTTTCCATAGCTCAAAAACTTCAAATGATGACCCGTGGCTATGTTTGGTTTGCAACAGATTGGCTTTGTGCTACTTTAGATTCATTCTCACCAATGAATCAAACTTCACTCCGTTTCCTCCAAGGGGTAGTTGGACTTCGTCAACATATTCCACAATCCAGGAAGAAGGATGCTTTTGTGTCCCAGTGGAGAAAAATGCAGAAAAAAGGGTTAGTAAGTTCTGGATTGAATACGTATGGACTTTATGCTTATGACACTGTGTGGGCGGTTGCATATGCAATTGATAAGTTTTTAAAGGAAAATGGCAATATGTCATTTTCTGAAAGTGATAAGTTACATGATATGAGAGCAACTCAGTTTGGGAAGCTAGAAGTTTTTGAGAATGGAAATTTTTTGCGTGAACAATTACTGCAGATAAATTTCACTGGTTTAACAGGTCGGATTCAATTTGATCCAGAAAGGAATGTCATGAATGGTAGTTATGATGTCATTAATATTGTCCACACAGAAATTCGTGGGGTTGGTTATTGGTCTAATTATTCAGGTCTCTCAGTGCTACCCCCAGAAGATCTCAAAGGTGAACAAAATAGGAATTCCCTTCTAGATCAGAAGCTTCGCATTGTTACCTGGCCTGGTGGAATCACAGAAAAACCACGTGGTTGGGAGATTGCTGCCAATGAAAGACCGTTGAGACTCGGGATTCCAAAAAGAACCAGTTTTGTTGATTTTGTAACAGAATTGAACACCAGTCACAAAGTCCAAGGATACTGTATTGATGTGTTTAATGCAGCACTGAAGCTAGTCCCATATAATGTTCCACACACATTCATACCATTTGGGGATGGTCGGTCCAATCCTCATTATGATGAGCTTGTGCAAAAGGTTGCCGATGATGTGTTTGATGGAGTTGTCGGGGACGTTGCAATTGTTACAAATCGGACAAGGATTGTGGACTTCACTCAGCCTTACGCTGCGACTGGTCTTGTCATAGTAGCTCCTGTCCATAACACAAAATTAAGTGCATGGGTCTTTCTTAAACCATTTACAGTTGAGATGTGGTGTGTCACTGCAGCTGCTTTTGTGATGATTGCTGTGGTAATTTGGATTCTTGAGCATCGTGTCAATGACGATTTTAGGGGTCCTCCTAAGAGGCAGCTCATCACAATGTTCCTGTTCAGCTTTTCAACACTATTCAAGACAAACCAAGAAGATACCAGAAGCACATTAGGACGGATAGTGATGGTGGTGTGGCTTTTCTTATTGATGGTAATCACATCAAGTTATACAGCTAGCTTGACTTCAATCCTTACGGTCCAGCAACTTTCATCACCCATCACAGGAATTGACAGCTTGATCGCAAGTGACTTGCCTATCGGTTATCAAGTAGGGTCATTTGCCTTCAGCTATCTGAGGGACAGTCTTTACGTACACCAATCAAGACTTGTTTCTCTAGGCTCCCCAGAAGCATATGAAATGGCATTGCGAAAAGGGCCAAAAGGTGGAGGGGTGGCTGCTATTGTAGATGAGCTTCCATATGTGGAGCTTTTTCTAGAAAAGCAGAAGGATTTTGGGGTTTTTGGGCAAACATTCACCAAGAGCGGCTGGGGATTTGCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTGAGACTTTCTGAGACTGGAACACTTCAGAAGATCCATGAGAATTGGTTTTGTAAGATGGGTTGTCCTGGATGGAGGAGACGGAAGTCTGAACCTAACCAACTCCATATGATCAGCTTCTGGGGTCTATATCTTTTATGTGGTTCTATTACACTTATTGCACTCCTAGTGTTTCTGCTACGAACCATTCGCCAGTTTGCCCGGTACAAAAGGAAGAAGCCAATACAGATAGGCGATTCTCCCTCGGTGTCATCAAATACCCGCTGTTCCCAGGTCATTTACAACTTCTTTGACTTCATAGATGAGAAGGAAGAAGCCATCAAGAAAATGTTCAAGCAGCAAGAGAATCCCCAGCCTCAGGTGAGCTAA 2730 0.4242 MRHVVALPLALWVWVIFHGSVLCQRPAVVNIGAVFTFDSVIGRPAKVAMKVAVSDVNSDPRILNGTELNLIMGDAKCSVFMGCIAAFQVLERQVLAIIGPQSSSIAHMISQIANGLQVPQISYAATDPTLSALQFPFFLRTTHSDSYQMAAMADLIDYYGWKEVIVIFVDDDYGRNGMAALDDELEKRGSKISYKLPLPTEFNVRDFTEMLNKSKLIGPRVYVVHVNPDPSFRIFSIAQKLQMMTRGYVWFATDWLCATLDSFSPMNQTSLRFLQGVVGLRQHIPQSRKKDAFVSQWRKMQKKGLVSSGLNTYGLYAYDTVWAVAYAIDKFLKENGNMSFSESDKLHDMRATQFGKLEVFENGNFLREQLLQINFTGLTGRIQFDPERNVMNGSYDVINIVHTEIRGVGYWSNYSGLSVLPPEDLKGEQNRNSLLDQKLRIVTWPGGITEKPRGWEIAANERPLRLGIPKRTSFVDFVTELNTSHKVQGYCIDVFNAALKLVPYNVPHTFIPFGDGRSNPHYDELVQKVADDVFDGVVGDVAIVTNRTRIVDFTQPYAATGLVIVAPVHNTKLSAWVFLKPFTVEMWCVTAAAFVMIAVVIWILEHRVNDDFRGPPKRQLITMFLFSFSTLFKTNQEDTRSTLGRIVMVVWLFLLMVITSSYTASLTSILTVQQLSSPITGIDSLIASDLPIGYQVGSFAFSYLRDSLYVHQSRLVSLGSPEAYEMALRKGPKGGGVAAIVDELPYVELFLEKQKDFGVFGQTFTKSGWGFAFQKDSPLAADLSTAILRLSETGTLQKIHENWFCKMGCPGWRRRKSEPNQLHMISFWGLYLLCGSITLIALLVFLLRTIRQFARYKRKKPIQIGDSPSVSSNTRCSQVIYNFFDFIDEKEEAIKKMFKQQENPQPQVS* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0607 909 SUPERFAMILY Periplasmic binding protein-like I 23 455 IPR028082 -
Vvi12g0607 909 Gene3D - 576 706 - -
Vvi12g0607 909 CDD GluR_Plant 462 804 - -
Vvi12g0607 909 FunFam Glutamate receptor 144 305 - -
Vvi12g0607 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 872 IPR015683 -
Vvi12g0607 909 FunFam Glutamate receptor 701 808 - -
Vvi12g0607 909 Gene3D - 707 807 - -
Vvi12g0607 909 Pfam Receptor family ligand binding region 47 401 IPR001828 -
Vvi12g0607 909 Pfam Bacterial extracellular solute-binding proteins, family 3 482 804 IPR001638 -
Vvi12g0607 909 CDD PBP1_GABAb_receptor_plant 30 419 IPR044440 -
Vvi12g0607 909 Gene3D - 47 392 - -
Vvi12g0607 909 FunFam Glutamate receptor 459 575 - -
Vvi12g0607 909 Pfam Ligand-gated ion channel 805 835 IPR001320 GO:0015276|GO:0016020
Vvi12g0607 909 FunFam Glutamate receptor 575 705 - -
Vvi12g0607 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 42 58 - -
Vvi12g0607 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Vvi12g0607 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 317 329 - -
Vvi12g0607 909 Gene3D - 457 575 - -
Vvi12g0607 909 Gene3D - 144 417 - -
Vvi12g0607 909 SMART GluR_14 465 806 IPR001320 GO:0015276|GO:0016020
Vvi12g0607 909 SUPERFAMILY Periplasmic binding protein-like II 440 804 - -
Vvi12g0607 909 PIRSF IGluLR_plant 1 909 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0607 Vvi-Chr12 7057042 7062522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0607 23 903 Ion Channels AT2G32400 56.580 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0607 K05387 - vvi:100255191 1813.51