Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi12g0586 | ATGAATGATCTCTTCTCAAGTTCGTTCAAAAGATTTACAGACCTCAAGCCGCAGTCCTTTGATGTTGAGGCTGGTGGGGATGCTGGAAGAGAGAGTGTCAATCTCGAAAAATTCTTCGAAGAAGTGGAGAATGTCAAGGATGATATGAGAGCTGTGGAAAATTTCTACAAGAAACTCCAAGATTTGAATGAAGAAAGCAAAACAGTCCACAATGCGAAGACCATGAAAGACCTTCGGGCCCGAATGGATACTGATGTTGTGCAGGTCTTGAAACGGGTTAAAATCATCAAGGGGAAGCTGGAGGCCCTTGAACGCTCCAACGCCGCTAACCGCAACCATCCAGGATGTGGCCCTGGGTCCTCCGCAGATCGAACCAGGACTTCTGTTGTTGGGGGACTGGGGAAGAAGCTCAAGGACATGATGGATGATTTTCAGAACTTAAGGGTCAGGATGAATGCTGAATACAAGGACACAATCGAGCGAAGGTACTTCACTATAACGGGGGAGAAAGCAGATGAAGAGACCATCGAGAACTTGATATCGAGCGGAGAAAGCGAAACCTTCCTTCAGAAGGCGATTCAGGATCAGGGCAGAGGCCAAATCATGGACACCATTTCTGAATTGCAGGAGAGGCATGGGGCGGTGAAGGAGATAGAGAAAAATCTGATAGAGCTTCACCAAGTGTTCCTAGATATGGCCGCACTGGTAGAGGCGCAGGGGCAGCACCTGAACGACATCGAAAGCCATGTAGCCCATGCCAGTTCCTTCGTCAGAAAAGGCACCGATCAGCTCCAGATTGCGAGGAACTACCAGAAGAGCAGCAGGAAATGGACCTGCATCGCCGTTGGGCTAGCCATTTGTTTGATCATTGTCATCCTTTTCCCCGTCTTGAAGTCCCTTGATATGATTCACTTGTAG | 918 | 0.4847 | MNDLFSSSFKRFTDLKPQSFDVEAGGDAGRESVNLEKFFEEVENVKDDMRAVENFYKKLQDLNEESKTVHNAKTMKDLRARMDTDVVQVLKRVKIIKGKLEALERSNAANRNHPGCGPGSSADRTRTSVVGGLGKKLKDMMDDFQNLRVRMNAEYKDTIERRYFTITGEKADEETIENLISSGESETFLQKAIQDQGRGQIMDTISELQERHGAVKEIEKNLIELHQVFLDMAALVEAQGQHLNDIESHVAHASSFVRKGTDQLQIARNYQKSSRKWTCIAVGLAICLIIVILFPVLKSLDMIHL* | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi12g0586 | 305 | CDD | SynN | 35 | 192 | IPR006011 | GO:0016020 | |
| Vvi12g0586 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 205 | 267 | IPR000727 | - | |
| Vvi12g0586 | 305 | PANTHER | SYNTAXIN | 47 | 290 | IPR045242 | - | |
| Vvi12g0586 | 305 | SUPERFAMILY | t-snare proteins | 34 | 260 | IPR010989 | GO:0016020|GO:0016192 | |
| Vvi12g0586 | 305 | ProSitePatterns | Syntaxin / epimorphin family signature. | 211 | 250 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Vvi12g0586 | 305 | Gene3D | - | 35 | 162 | - | - | |
| Vvi12g0586 | 305 | Coils | Coil | 42 | 65 | - | - | |
| Vvi12g0586 | 305 | Gene3D | - | 198 | 298 | - | - | |
| Vvi12g0586 | 305 | SMART | SynN_4 | 30 | 156 | IPR006011 | GO:0016020 | |
| Vvi12g0586 | 305 | SMART | tSNARE_6 | 200 | 267 | IPR000727 | - | |
| Vvi12g0586 | 305 | Pfam | Syntaxin | 37 | 240 | IPR006011 | GO:0016020 | |
| Vvi12g0586 | 305 | CDD | SNARE_syntaxin1-like | 204 | 265 | - | - | |
| Vvi12g0586 | 305 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 32 | 162 | - | - | |
| Vvi12g0586 | 305 | FunFam | Syntaxin 132 | 198 | 298 | - | - | |
| Vvi12g0586 | 305 | Pfam | SNARE domain | 243 | 293 | IPR000727 | - | |
| Vvi12g0586 | 305 | MobiDBLite | consensus disorder prediction | 108 | 127 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi12g0586 | Vvi-Chr12 | 6863293 | 6864210 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi12g0586 | 1 | 297 | SNARE and Associated Proteins | AT1G61290 | 75.251 | 2.03e-166 | 462 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi12g0586 | K08486 | - | vvi:100241360 | 598.971 |