Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0572 ATGGGTGGGAAGAGATCTGCTATAGATTGCTTGAATTTGGAGATCTATGCACAGACTTTCGTGGGCTTTGTGTTGATTTTTGCGGCGCAAGTTTTGCTTGGATATACCAGCCCTGGCGATGTTACTGCAATTAATAACTTATACGCTGCATTGGGTAGCCCCCTTCTTCCTGGATGGGTGTCTACTGGGGGAGACCCATGTGCTGATGCTTGGCAAGGAGTCTCATGTAACGGCTCGGAGATAAATTCAATAATTCTTAATGGTGCCAATTTGGGAGGAGAACTAGGTGATAGCTTGGGAACTTTTGCTTCTATCAAAGTGATAGACCTGAGCAACAACCAGATTGGGGGTAGTATTCCATCCAGTTTACCCCTTACCTTGCAGAACTTTTTTCTTTCAGCTAATCAGTTCACTGGAAGCATCCCAACTTCGTTATCCTCTCTTAGCTTACTTACAGACATGTCTCTAAACAACAATCTTTTAACTGGAGAGATCCCTGATGCGTTTCAAGCCCTTGTGGGTTTGATCAATCTAGATCTATCCAGTAACCATTTGAGTGGGCAATTGCCTCCATCAATGGAAAACTTGTCGTCGCTGACCACTCTGCGTTTGCAGATCAATCAGCTATCTGGGACCCTAGATGTTCTACAAGATCTTCCCCTTAAAGATTTGAATGTAGAGAATAACCTGTTCTCTGGAACGATACCTGATAAGTTGCTAAGCATTCCAAATTTCAGAAAAGATGGAAATCCATTCGGCAATGTTACTGCTCCTTTGCTTGCACCCACATCCCCATTGACACTCCCATCACCACCTCCTCCACTTTCTGGGCCGCCATCTTCCAACCAACCACCTGTGAAACCAGCTGATGGGCCATCTGCAACAGAGGAATCAAATTCAGGGGGGAAAGGAAAAGGTTTAAGCACTAAAAGGATAGTTTGGATATCAATTACAGTGGTCTTGGTATTTATAATTTTGGTGCTGGCACTTGTGCTTCTTGTAAAATGGTGTTGTGGAGAAAGGCAAGAGTCTGACTGGATATCTAAGCGAAATGAAACCGGTGCATATAAAGGCAGCAGATTGAATCTTAGAGATAATGGATCCTTGGAACAGCAAGTTCCAAAAGAGGCAGTTGGCACACCCAAGGAGGAACATCAAGAAGTGGTTAGAAGAATAGGTGTGGCTCCAAAGCCACAAAATGAACAAGATCGAAATGTGGAAAGAATGTTCACAATACCAAAGCAGGACAGTCATGAGATAGATATAAGTGGACTTGATGTGATGATGCCACCTCCTCCCCCTCCTCCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCTTGTTGAAACAGTTATTGTAAACCCAATTGTGCCAGTTGAAGTAAATGCAGAAAAACCTTCCATGAAAACTCTGAACCCCCCGATCTCTGCAAGATCTTTCACGATTGCATCACTTCAGCAATACACAAACAGCTTTTCTCAAGAGAATCTGATTGGATCGGGCATGCTGGGAACTGTCTATAGGGCACAGCTTCCTGGTGGAAAGCTACTTGCAGTCAAGAAACTGGACAAAAAGATTTGTAATCAGCAGAAGGATGATGAGTTTTTTGACCTGGTAAACAGTATTGATGGAATTCGACATGCTAATGTTGTCGAGCTCATGGGATACTGTGCGGAGCATGGTGAAAGACTTCTTATTTATGAGTATTGCAGTGATGGGACACTGCACGATGCCCTGCACTCAGATGATGAATTTAAGAAGAAACTTTCATGGAGTGCCCGGGTACGGATGGCGCTTGGAGCTGCTAGAGCCTTGCAGTATCTGCATGAGGTCTGTCGTCCACCTATTGTACACAGGAATTTCAAGTCTGCAAATGTGCTCCTTGATGATGAGCTCACCGTACGTGTCTCTGATTGTGGTTTGGCTCCTTTAATATCAAGATGTTCTGTAAGTCAGTTGTCAGGACGCTTATCGGCATATGGCTGTGAAGCCCCAGAACATGAGTCTGGGATTTATACTTTGAAGAGTGATGTCTACAGCTTTGGAGCAGTAATGTTAGAACTCTTGACAGGACGAAAGTCCTATGACAGCAAACGCAACCGAGGAGAAAAATTGCTGGTGAGATGGGCCATCCATCAGCTTCATGACATTGATGCTTTGTCAAGGATGGTTGATCCTTCATTGAATGGAGAATACCCTGCTAAATCTTTATCCCGCTTTGCTGACATTATCTCTCGGTGTGTTCAGGACGAGCCAGAATTCAGGCCACAAATGTCTGAAGTTGTGGACGACCTCATAGACATGATACAGAAAGAGGCTTCCAATAGATCAAATGGCGACTAA 2346 0.4459 MGGKRSAIDCLNLEIYAQTFVGFVLIFAAQVLLGYTSPGDVTAINNLYAALGSPLLPGWVSTGGDPCADAWQGVSCNGSEINSIILNGANLGGELGDSLGTFASIKVIDLSNNQIGGSIPSSLPLTLQNFFLSANQFTGSIPTSLSSLSLLTDMSLNNNLLTGEIPDAFQALVGLINLDLSSNHLSGQLPPSMENLSSLTTLRLQINQLSGTLDVLQDLPLKDLNVENNLFSGTIPDKLLSIPNFRKDGNPFGNVTAPLLAPTSPLTLPSPPPPLSGPPSSNQPPVKPADGPSATEESNSGGKGKGLSTKRIVWISITVVLVFIILVLALVLLVKWCCGERQESDWISKRNETGAYKGSRLNLRDNGSLEQQVPKEAVGTPKEEHQEVVRRIGVAPKPQNEQDRNVERMFTIPKQDSHEIDISGLDVMMPPPPPPPPPPPPPPPPPPLVETVIVNPIVPVEVNAEKPSMKTLNPPISARSFTIASLQQYTNSFSQENLIGSGMLGTVYRAQLPGGKLLAVKKLDKKICNQQKDDEFFDLVNSIDGIRHANVVELMGYCAEHGERLLIYEYCSDGTLHDALHSDDEFKKKLSWSARVRMALGAARALQYLHEVCRPPIVHRNFKSANVLLDDELTVRVSDCGLAPLISRCSVSQLSGRLSAYGCEAPEHESGIYTLKSDVYSFGAVMLELLTGRKSYDSKRNRGEKLLVRWAIHQLHDIDALSRMVDPSLNGEYPAKSLSRFADIISRCVQDEPEFRPQMSEVVDDLIDMIQKEASNRSNGD* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0572 781 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 571 779 - -
Vvi12g0572 781 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
Vvi12g0572 781 Pfam Protein tyrosine and serine/threonine kinase 496 766 IPR001245 GO:0004672|GO:0006468
Vvi12g0572 781 SUPERFAMILY L domain-like 36 244 - -
Vvi12g0572 781 MobiDBLite consensus disorder prediction 427 447 - -
Vvi12g0572 781 Gene3D Phosphorylase Kinase; domain 1 460 570 - -
Vvi12g0572 781 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Vvi12g0572 781 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 460 570 - -
Vvi12g0572 781 Gene3D Ribonuclease Inhibitor 40 254 IPR032675 -
Vvi12g0572 781 ProSiteProfiles Protein kinase domain profile. 493 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0572 781 MobiDBLite consensus disorder prediction 263 306 - -
Vvi12g0572 781 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 772 IPR046959 -
Vvi12g0572 781 Gene3D Transferase(Phosphotransferase) domain 1 572 780 - -
Vvi12g0572 781 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 263 - -
Vvi12g0572 781 SUPERFAMILY Protein kinase-like (PK-like) 471 766 IPR011009 -
Vvi12g0572 781 MobiDBLite consensus disorder prediction 358 384 - -
Vvi12g0572 781 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0572 Vvi-Chr12 6779162 6788959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0572 26 773 Strubbelig Receptor Gene Family AT4G03390 63.505 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vvi12g0572 PK_Tyr_Ser-Thr 5.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0572 - - vvi:100248332 1417.14