Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0561 ATGGGAGGTTGTGTGTCAACTAGCAGTCGGAGTACTTGTAGTAGCAGGGGCAATGGAAAGAGAGTTTCTCCATCTTGTATGGGGATTGGGATTTGTAGGCGAAAGAGAACTAAGAAAACATTTGCAGACCATGTCAATACATTGCAACATTTGCCCTCAATCCCCAACCGAATTTTCACGAATGGGAAGAGCCGAGCTTCCTGCATATTTACTCAGCAGGGCCGGAAGGGCATAAACCAGGATGCCATGATTGTGTGGGAAGATTTTATGTCGGACGATGTGACTTTTTGTGGTGTTTTTGACGGTCATGGTCCACATGGTCATCTTGTTGCCCGCAAAGTGAGGGATGCTTTGCCATTAAAGCTACTGTCATTCTTGCATTCTTATCAGTCAAGGCAAAACGGGTCCAGCACTGCTTGTTTCAAATCAGATTTGAAGAAGCTGGATGGTGGAGATTCTGAAAAGGACAGCTCAACCGAGGATAAACTGGACTGTCTATGGAGAGAAGCTTTCCTCAAGTCATACAAAGCCATGGACAAAGAATTAAGGTCCCATCCTAACTTGGATTGCTTCTGCAGTGGTAGCACCGCTGTTACTATAGTGAGACAGGGTTCAAATCTTTTCATGGGATATATTGGGGATTCACGAGCAATCTTGGGATCCAAGGACAGCAGTGATTCCATGGTGGCAATCCAGTTGACAGTTGATCTAAAACCTGATTTACCCAGGGAAGCTGAGAGGATTAAACGATGTAAAGGTAGGGTCTTTGCATTGCAAGATGAGCCTGAAGTGCCTAGAGTTTGGCTACCTTTTGATGATGCCCCTGGATTAGCCATGGCTCGAGCATTTGGGGATTTTTGTTTGAAGGAGTATGGGGTCATCTCTATACCAGAATTCTCTCACCGAATGCTTACAGATAGGGATCAGTTCATTGTTCTTGCTTCTGATGGGGTCTGGGATGTTTTGAGCAATGAAGAAGTGGTTGAGATAGTGTCCTCAGCTCCAACCCGTTCATCTGCTGCGAGGATCCTGGTGGACTCAGCTGCTCGTGAATGGAAACTCAAATACCCAACTTCAAAGATGGATGACTGTGCGGTGGTTTGCTTATTTTTGGATGGGAAAATGGACTCTGAATCTGATTACGAGGAACAAGGTTTTTCTACGGCCACCCTCCAAAGCAACCATTCTGGTAATGCAATGGAATCAGATGATGGCCAGAACTCTGAGCCATCTTTGCAGAGGAATTTTACTGTTAGATCATCAGAAGAAAATGATTCTTTCAGAAGAATACCGATTGAGATTGAAGGTCACGAAGAAACGGTAATGGCAGAAGATCAGAACTGGTTGGGTTTGGAGGGTGTCACTCGAGTTAACTCGCTTGTTCAACTTCCAAGATTTTCAGAAGAGAGGCCAAACTCCTAA 1422 0.4494 MGGCVSTSSRSTCSSRGNGKRVSPSCMGIGICRRKRTKKTFADHVNTLQHLPSIPNRIFTNGKSRASCIFTQQGRKGINQDAMIVWEDFMSDDVTFCGVFDGHGPHGHLVARKVRDALPLKLLSFLHSYQSRQNGSSTACFKSDLKKLDGGDSEKDSSTEDKLDCLWREAFLKSYKAMDKELRSHPNLDCFCSGSTAVTIVRQGSNLFMGYIGDSRAILGSKDSSDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRMLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYEEQGFSTATLQSNHSGNAMESDDGQNSEPSLQRNFTVRSSEENDSFRRIPIEIEGHEETVMAEDQNWLGLEGVTRVNSLVQLPRFSEERPNS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0561 473 ProSiteProfiles PPM-type phosphatase domain profile. 66 371 IPR001932 -
Vvi12g0561 473 MobiDBLite consensus disorder prediction 1 21 - -
Vvi12g0561 473 SMART PP2C_4 50 369 IPR001932 -
Vvi12g0561 473 FunFam probable protein phosphatase 2C 52 57 374 - -
Vvi12g0561 473 MobiDBLite consensus disorder prediction 1 22 - -
Vvi12g0561 473 Pfam Protein phosphatase 2C 147 348 IPR001932 -
Vvi12g0561 473 PANTHER PROTEIN PHOSPHATASE 66 369 IPR015655 GO:0004722|GO:0006470
Vvi12g0561 473 MobiDBLite consensus disorder prediction 392 420 - -
Vvi12g0561 473 MobiDBLite consensus disorder prediction 392 429 - -
Vvi12g0561 473 CDD PP2Cc 72 371 IPR001932 -
Vvi12g0561 473 SUPERFAMILY PP2C-like 57 373 IPR036457 -
Vvi12g0561 473 Gene3D - 59 379 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0561 Vvi-Chr12 6692995 6696785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0561 1 473 PP2C-type Phosphatase Gene Family AT1G03590 70.772 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0561 - - vvi:100258592 948.732