Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0558 ATGGACAGGAAGCAGAAAATGGTGAGCAGAAGTGAAAACGACGACGTTTTGAAGATCTCACGTGAGGCTGATGAAGCAGAGCTCATGCTACAAGGCCAAGCAAATATATGGCGTCACATGTTCGCCTTTGCAGATTCCATGGTGCTGAAATGTGCTTTGGAGCTCCGCATAGCCGATATCATACACTCTCACGCCCGCCCAATCACCTTGTCCCAAATCGCCACCTGTATCGACTCACCGTCTCCGGATATCACCTGCCTCGCCCGCATCATGAGATTCCTGGTCTGCGCCAAGATCTTCACCGCCGCTCCTCCTCCTCAGTCAGATGGCGGAGAAACTCTCTACGGCCTCACCCCCTCCTCCAAATGGCTCCTCCACGACGCCGAGCTGAGCCTCGCGCCGATGGTGCTCATGGAGAACCACCCCTTTCTCATGGCTCCCTGGCACTGCTTGGGGACGTGCGTCAAAGAAGGTGGCATAGCCTTCGAGAAGGCTCACGGCCGCCAGATTTGGGACTTCGCATCGGAAAATCCCGAATTCAACAAGCTCTTCAATGACGGTATGGCGTGTACGGCTAAGGTCGTCATGGGGGAGGTGGTAGCAGCGTATAAAGATGGGTTCGGCAGCATTAGAACACTGGTGGACGTGGGAGGTGGCACCGGAGGGGCGGTGGCGGAGGTGGTGAAGGCGTATCCGCACATCAAGGGCATTAACTTCGACCTCCCACATGTGGTGGCCTCAGCGCCGGCGTACGAAGGAGTGTCCCACGTCGGGGGCGACATGTTCGAGTCCATCCCTAACGCTGATGCAATCTTCATGAAGTGGATAATGCACGATTGGAGTGACGAAGACTGCATAAAAATCTTAAAAAATTGTCGGAAAGCAGTACCGGAGAAAACAGGGAAAATTATTATCGTCGATGGAGTGATACGAGAAGATAGCGATGACCCATTTGATAAAACAAGGTTGGTGTTCGATTTACTGATGATCGCGCATAGCTCCAACGGGAAAGAGAGAAGCGAGGTGGAATGGAAGAAAGTATTAGAGGAAGGAGGATTTCCTCGCTACAGAATCCTGGAGATTTCGATCTCCACTTTACCAATGATAATTGAGGCATATCCAGAGTAA 1128 0.5239 MDRKQKMVSRSENDDVLKISREADEAELMLQGQANIWRHMFAFADSMVLKCALELRIADIIHSHARPITLSQIATCIDSPSPDITCLARIMRFLVCAKIFTAAPPPQSDGGETLYGLTPSSKWLLHDAELSLAPMVLMENHPFLMAPWHCLGTCVKEGGIAFEKAHGRQIWDFASENPEFNKLFNDGMACTAKVVMGEVVAAYKDGFGSIRTLVDVGGGTGGAVAEVVKAYPHIKGINFDLPHVVASAPAYEGVSHVGGDMFESIPNADAIFMKWIMHDWSDEDCIKILKNCRKAVPEKTGKIIIVDGVIREDSDDPFDKTRLVFDLLMIAHSSNGKERSEVEWKKVLEEGGFPRYRILEISISTLPMIIEAYPE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0558 375 Pfam Dimerisation domain 47 95 IPR012967 GO:0046983
Vvi12g0558 375 PANTHER O-METHYLTRANSFERASE 29 355 IPR016461 GO:0008168
Vvi12g0558 375 FunFam Coniferyl alcohol 9-O-methyltransferase 19 124 - -
Vvi12g0558 375 FunFam O-methyltransferase family protein 126 373 - -
Vvi12g0558 375 Gene3D Vaccinia Virus protein VP39 126 372 IPR029063 -
Vvi12g0558 375 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Vvi12g0558 375 SUPERFAMILY "Winged helix" DNA-binding domain 27 127 IPR036390 -
Vvi12g0558 375 PIRSF O-mtase 15 375 IPR016461 GO:0008168
Vvi12g0558 375 Gene3D - 18 124 IPR036388 -
Vvi12g0558 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 37 374 IPR016461 GO:0008168
Vvi12g0558 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 365 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0558 Vvi-Chr12 6643771 6644975 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0558 47 359 Monolignol Biosynthesis Gene Families AT5G54160 40.694 2.66e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0558 K22588 - vvi:100251744 758.059