Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0556 ATGGCGTGTACGACTAAGATTGCCATGAAGGCGGTAGTGGCAGCATATAAAGATGGGTTTGGCTGCATTGGAACGCTGGTAGGCATCGGAGGTGGCACAAGAAAGGCGGTAGTGGAGCTAGTGAAGGCGTATCCTCGTATCACGGCCATTAACTTCGACCTCCCATATGTGCTCGCCTCAGCGCCAACGTACGAAGGAGTGTCCCACGTCAAGGGTGACATGTTCGAGTCCATCCCTAACGCCGATGCAATCTTCATGAAGTGGATATTGCACGATTGGAATGACGAAGATTGCATCAAGATCTAA 306 0.5098 MACTTKIAMKAVVAAYKDGFGCIGTLVGIGGGTRKAVVELVKAYPRITAINFDLPYVLASAPTYEGVSHVKGDMFESIPNADAIFMKWILHDWNDEDCIKI* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0556 101 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 101 IPR016461 GO:0008168
Vvi12g0556 101 Gene3D Vaccinia Virus protein VP39 3 101 IPR029063 -
Vvi12g0556 101 PANTHER O-METHYLTRANSFERASE 1 101 IPR016461 GO:0008168
Vvi12g0556 101 Pfam O-methyltransferase domain 4 101 IPR001077 GO:0008171
Vvi12g0556 101 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 101 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0556 Vvi-Chr12 6624562 6627461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0556 1 101 Monolignol Biosynthesis Gene Families AT1G77520 51.485 6.59e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0556 K22588 - vvi:100256875 161.384