Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0555 ATGGTGGGCACAAGTGAAAACGGCGACGTTTTGAAGGTCTCGTCTGAGGCCGATGAAACAGAGCTCATGCTACAAGGCCAAGCAAATATATGGCGTCACATGTTCGCCTTTGCAGATTCCATGGCGCTGAAATGTGCTGTGGAGCTCCGCATAGCCGATATCATACACTCTCACGCCCGCCCAATCACCTTGTCCCAAATCGCCACCTGTATCGATTCACCGTCTCCGGATATCACCTGCCTCGCCCGCATCATGAGATTCCTGGTCCGCGCCAAGATCTTCACCGCCGCTCCTCCTCCTCAGTCAGATGGCGGAGAAACTCTCTACGGCCTCACCCCCTCCTCCAAATGGCTCCTCCACGACGCCGAGCTGAGCCTCGCGCCGATGGTGCTCATGGAGAACCACCCCTCTCTCATGGCTCCCTGGCACTGCTTCGGGACGTGCGTCAAAGAAGGTGGCATAGCCTTCGAGAAGGCTCACGGCCACCAGATTTGGGACTTAGCATCGGAAAAACCCGAATTCAACAAGCTCTTCAATGACGGTATGGCGTGTACGGCTAAGATCTCCATCAAGGCGGTGATAGCAGCATATAAAGATGGGTTCGGCTCCATTGGAACTCTGGTGGACGTGGGAGGTGGCACCGGAGGGGCGGTGGCGGAGGTGGTGAAGGCGTATCCGCATATCAAGGGCATTAACTTCGACCTCCCACATGTGGTCGCCACAGCGCCGGCGTACGAAGGAGTGTCCCACGTCGGGGGTGACATGTTCGAGTCCATCCCTGACGCTGATGCAATCTTCATGAAGTGGATATTGCACGATTGGAATGACGAAGACTGCGTCAAGATCTTAAAAAACTGTCGGAAAGCAATACCGGAGAAAACTGGGAAAGTTATCATCGTTGATGGAGTGATCCGAGAAGATGGCTATGAGCCATTTGATGAAACAAGGCTGGTGTTGGATTTAGTGATGATGGCGCATACCTCTCACGGGCAAGAGAGAACCGAGGTTGAATGGAAGAAATTATTGGAGGAAGGAGGGTTTCCTCGTTACAGAATCTTAAAGATTCCAACTTTGCAGATGATAATCGAGGCTTATCCAGTGTAG 1104 0.5308 MVGTSENGDVLKVSSEADETELMLQGQANIWRHMFAFADSMALKCAVELRIADIIHSHARPITLSQIATCIDSPSPDITCLARIMRFLVRAKIFTAAPPPQSDGGETLYGLTPSSKWLLHDAELSLAPMVLMENHPSLMAPWHCFGTCVKEGGIAFEKAHGHQIWDLASEKPEFNKLFNDGMACTAKISIKAVIAAYKDGFGSIGTLVDVGGGTGGAVAEVVKAYPHIKGINFDLPHVVATAPAYEGVSHVGGDMFESIPDADAIFMKWILHDWNDEDCVKILKNCRKAIPEKTGKVIIVDGVIREDGYEPFDETRLVLDLVMMAHTSHGQERTEVEWKKLLEEGGFPRYRILKIPTLQMIIEAYPV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0555 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 366 IPR016461 GO:0008168
Vvi12g0555 367 FunFam O-methyltransferase family protein 120 365 - -
Vvi12g0555 367 PIRSF O-mtase 10 367 IPR016461 GO:0008168
Vvi12g0555 367 Pfam O-methyltransferase domain 142 347 IPR001077 GO:0008171
Vvi12g0555 367 Gene3D - 12 118 IPR036388 -
Vvi12g0555 367 PANTHER O-METHYLTRANSFERASE 23 349 IPR016461 GO:0008168
Vvi12g0555 367 Pfam Dimerisation domain 41 89 IPR012967 GO:0046983
Vvi12g0555 367 FunFam Coniferyl alcohol 9-O-methyltransferase 13 118 - -
Vvi12g0555 367 SUPERFAMILY "Winged helix" DNA-binding domain 20 121 IPR036390 -
Vvi12g0555 367 Gene3D Vaccinia Virus protein VP39 120 367 IPR029063 -
Vvi12g0555 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 364 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0555 Vvi-Chr12 6622273 6623453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0555 41 353 Monolignol Biosynthesis Gene Families AT5G54160 41.009 2.50e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0555 K22588 - vvi:100256875 744.191