LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0555	ATGGTGGGCACAAGTGAAAACGGCGACGTTTTGAAGGTCTCGTCTGAGGCCGATGAAACAGAGCTCATGCTACAAGGCCAAGCAAATATATGGCGTCACATGTTCGCCTTTGCAGATTCCATGGCGCTGAAATGTGCTGTGGAGCTCCGCATAGCCGATATCATACACTCTCACGCCCGCCCAATCACCTTGTCCCAAATCGCCACCTGTATCGATTCACCGTCTCCGGATATCACCTGCCTCGCCCGCATCATGAGATTCCTGGTCCGCGCCAAGATCTTCACCGCCGCTCCTCCTCCTCAGTCAGATGGCGGAGAAACTCTCTACGGCCTCACCCCCTCCTCCAAATGGCTCCTCCACGACGCCGAGCTGAGCCTCGCGCCGATGGTGCTCATGGAGAACCACCCCTCTCTCATGGCTCCCTGGCACTGCTTCGGGACGTGCGTCAAAGAAGGTGGCATAGCCTTCGAGAAGGCTCACGGCCACCAGATTTGGGACTTAGCATCGGAAAAACCCGAATTCAACAAGCTCTTCAATGACGGTATGGCGTGTACGGCTAAGATCTCCATCAAGGCGGTGATAGCAGCATATAAAGATGGGTTCGGCTCCATTGGAACTCTGGTGGACGTGGGAGGTGGCACCGGAGGGGCGGTGGCGGAGGTGGTGAAGGCGTATCCGCATATCAAGGGCATTAACTTCGACCTCCCACATGTGGTCGCCACAGCGCCGGCGTACGAAGGAGTGTCCCACGTCGGGGGTGACATGTTCGAGTCCATCCCTGACGCTGATGCAATCTTCATGAAGTGGATATTGCACGATTGGAATGACGAAGACTGCGTCAAGATCTTAAAAAACTGTCGGAAAGCAATACCGGAGAAAACTGGGAAAGTTATCATCGTTGATGGAGTGATCCGAGAAGATGGCTATGAGCCATTTGATGAAACAAGGCTGGTGTTGGATTTAGTGATGATGGCGCATACCTCTCACGGGCAAGAGAGAACCGAGGTTGAATGGAAGAAATTATTGGAGGAAGGAGGGTTTCCTCGTTACAGAATCTTAAAGATTCCAACTTTGCAGATGATAATCGAGGCTTATCCAGTGTAG	1104	0.5308	MVGTSENGDVLKVSSEADETELMLQGQANIWRHMFAFADSMALKCAVELRIADIIHSHARPITLSQIATCIDSPSPDITCLARIMRFLVRAKIFTAAPPPQSDGGETLYGLTPSSKWLLHDAELSLAPMVLMENHPSLMAPWHCFGTCVKEGGIAFEKAHGHQIWDLASEKPEFNKLFNDGMACTAKISIKAVIAAYKDGFGSIGTLVDVGGGTGGAVAEVVKAYPHIKGINFDLPHVVATAPAYEGVSHVGGDMFESIPDADAIFMKWILHDWNDEDCVKILKNCRKAIPEKTGKVIIVDGVIREDGYEPFDETRLVLDLVMMAHTSHGQERTEVEWKKLLEEGGFPRYRILKIPTLQMIIEAYPV*	368

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0555	367	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	31	366	IPR016461	GO:0008168
	Vvi12g0555	367	FunFam	O-methyltransferase family protein	120	365	-	-
	Vvi12g0555	367	PIRSF	O-mtase	10	367	IPR016461	GO:0008168
	Vvi12g0555	367	Pfam	O-methyltransferase domain	142	347	IPR001077	GO:0008171
	Vvi12g0555	367	Gene3D	-	12	118	IPR036388	-
	Vvi12g0555	367	PANTHER	O-METHYLTRANSFERASE	23	349	IPR016461	GO:0008168
	Vvi12g0555	367	Pfam	Dimerisation domain	41	89	IPR012967	GO:0046983
	Vvi12g0555	367	FunFam	Coniferyl alcohol 9-O-methyltransferase	13	118	-	-
	Vvi12g0555	367	SUPERFAMILY	"Winged helix" DNA-binding domain	20	121	IPR036390	-
	Vvi12g0555	367	Gene3D	Vaccinia Virus protein VP39	120	367	IPR029063	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g0555	Vvi-Chr12	6622273	6623453	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0555	41	353	Monolignol Biosynthesis Gene Families	AT5G54160	41.009	2.50e-82	253

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0555	K22588		-	vvi:100256875	744.191

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