Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0544 ATGAGGAAGAGGGAGAGGGAGAACCCGTGCGGGGTTTGTGGCCACTACCACAAATATGAGGAAGGAGAGGTTTGTGGTGTTTGTGGCCACCGGATTCCGGCATCATCAGAGAAAACTTCGATTCAGGTGAGCGCTTTTCCGTCAGAGATCCTGCCGGAGTTTCTGTATTTGGGCAGCTACGATAACGCATCGCGCTCGGAGCTTCTCAAGACTCAGGGAATCTCTCGCGTTCTCAATACGGTACCTGCTTGTCAAAATCTCTACAAAAATTCCTTCACTTATTACTGCCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGAGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAAAAAATAGGTCACCAGCTATTGTAATAGCGTACTTGATGAAGTGCAAAGGATGGAGGTTTGCACAGAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAGCTGTTCACGAGCAGTTGCAGGAGTATGAGCGGAGTATTTTTGGGTCGATGGAGAGCATTAGCCCCACCATGCCAATCTTCCAACCTTCAGGGGCAGCATCCTTTACCTTTGGCTTCCCAAAGGCCAATGATCCACTTCCTGCTCCTGCCTTCAACACCATTGGTGCTGCATCCATTTTTGCTCGTCCTCCTGCAGACGTTCCTCCACATGAGTTCAAGTTCGGTGCTGGCCAGACCGACAAGAATATCGTGGAGAGCCCTTTCATTGCCAACCCATCAAATCCAAATAGCAGTGATATTCCCATGGACAGCTCCTGA 819 0.4835 MRKRERENPCGVCGHYHKYEEGEVCGVCGHRIPASSEKTSIQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYYCLPDDKSLPFDDAIQFLEQCEKDKARVLVHCMSGKNRSPAIVIAYLMKCKGWRFAQSYQWVKERRPSVELSQAVHEQLQEYERSIFGSMESISPTMPIFQPSGAASFTFGFPKANDPLPAPAFNTIGAASIFARPPADVPPHEFKFGAGQTDKNIVESPFIANPSNPNSSDIPMDSS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0544 272 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Vvi12g0544 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 272 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Vvi12g0544 272 MobiDBLite consensus disorder prediction 250 272 - -
Vvi12g0544 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Vvi12g0544 272 CDD DSP_plant_IBR5-like 47 176 - -
Vvi12g0544 272 SMART dsp_5 46 179 IPR020422 GO:0006470|GO:0008138
Vvi12g0544 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311|GO:0016791
Vvi12g0544 272 Pfam Dual specificity phosphatase, catalytic domain 55 178 IPR000340 GO:0008138|GO:0016311
Vvi12g0544 272 MobiDBLite consensus disorder prediction 251 272 - -
Vvi12g0544 272 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
Vvi12g0544 272 Gene3D Protein tyrosine phosphatase superfamily 33 186 IPR029021 -
Vvi12g0544 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470|GO:0008138
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0544 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.698 1.19e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0544 K04459 - vvi:100249965 564.688