Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0527 ATGCGGCGAGGCAGGGCCACCGCGAGAGATGCCCCACAGCAACAAGAGGTCAGGAATCAGGGCAAAGATGTGAGGTTCAGAGGCGTGAGGAAGAGACCTTGGGGCCGTTTCGCCGCCGAGATCCGGGACCCGTGGAAGAAGACTCGGGTCTGGCTCGGCACCTTCGACTCCGCGGAGGATGCAGCCCGAGCCTACGACGCCGCCGCTCGATCCCTCCGCGGTCCCAAGGCCAAGACCAATTTTCCGTTGTCATCTCCGGCGGTTCCGTTGACCGTGCCGTTTCAACAACCGAGTCAATATCAGATTCAAGATCAGAATCACAGTCATCAGCATCAGCCTCAGAGGCCAACCACGAGCGGTATGAGCAGCACCGTGGAGTCCTTCAGCGGGCCCAGGCTCTCAAACCCGCCGTCGGCGCCGCCGCGGCCGCGCCTCCGGGCTCCTCCGGTAAACGATTGCCAGAGCGATTGCGACTCCTCCTCGTCGGTGATTGACGAGTGCGACGGCGATCTCACATCTTCTTCCCGCAAACCCCTGCCGTTCGATCTAAATCTGCTTCCCCCTTCGGAAGATGGTGATGATGATGATCTCGATGCCACGGCTCTGTGCCTGTGA 615 0.6114 MRRGRATARDAPQQQEVRNQGKDVRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLSSPAVPLTVPFQQPSQYQIQDQNHSHQHQPQRPTTSGMSSTVESFSGPRLSNPPSAPPRPRLRAPPVNDCQSDCDSSSSVIDECDGDLTSSSRKPLPFDLNLLPPSEDGDDDDLDATALCL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0527 204 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Vvi12g0527 204 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Vvi12g0527 204 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vvi12g0527 204 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vvi12g0527 204 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vvi12g0527 204 MobiDBLite consensus disorder prediction 153 169 - -
Vvi12g0527 204 MobiDBLite consensus disorder prediction 1 24 - -
Vvi12g0527 204 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Vvi12g0527 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 184 - -
Vvi12g0527 204 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Vvi12g0527 204 MobiDBLite consensus disorder prediction 84 133 - -
Vvi12g0527 204 MobiDBLite consensus disorder prediction 70 204 - -
Vvi12g0527 204 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vvi12g0527 204 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0527 Vvi-Chr12 6403551 6404165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0527 1 150 AP2-EREBP Transcription Factor Family AT1G50640 55.488 3.07e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi12g0527 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0527 K09286 - vvi:100241392 338.191