Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0526 ATGCTGGATAATCGGCAAGTTCAGAGCAATGGCGTGTCGAATCCGTCGTCGGAAAACGTGGAAGAAGCAATTTTGCGGTTGAAAATACATGATAATCAGGAGGAAGGTAGTGTGGGTCACTCAAGTCCTTATCCTGACCGTCCTGGGGAACCTGATTGCATATATTATTTAAGGACTGGGTTATGTGGTTATGGAAGCAATTGTCGTTTCAATCATCCTGCTTATTCTGAACAGGGTGCCCAGTATAGAGGTGAACTCCCAGAAAGAGTTGGACAACCTGACTGTGGGTACTTTTTGAAGACAGGAACCTGCAAATATGGATCTACATGTAAATATCATCACCCACGGGACAGGCATGGTGCTGGACCAGTCTCATTGAACATTGTAGGTCTACCCATGCGTCAGGAAGAAAAACCATGTTCTTACTACATGCGAACTGGGTTGTGTAAGTTTGGAGCTGCATGCAAGTTTCATCATCCCCAGCCTGCATCAGCTGGAACTGTTTTGCCTGCAACTGGTCCTGCTGCCTTTGGATCTACAGGCTCATCAATTTTACCTTCATCAGGGTTACCGTATGTGGGCGGTCTTCCAGCATGGTCATTACCAAGAGCACCATATATACCTGGCCCGCGTATGCAAGGTCCACAGACCTACATGCCTATTGTTCTTTCTCCTTCTCAAGGCATCGTACCTGCACAAGGCTGGAACACTTACATGGGAAACATGAGTCCCATATCTTCAACTGGTATTCTGGGATCCAATCTTGTCTACAACTCCAGGAATCAGAGTGAGTCAGGTTCCAGTGGGCAGGTGCACTTGTTATCATCATTGATTCCACATTTACCTGAGAGGCCAGATCAACCAGAATGCCGGTATTTCATGAGCACGGGGAGCTGTAAATATGGTTCTGATTGCAAGTATCATCACCCAAAAGAAAGGATTGCTCAGTTGGCAACAAATACTTTAGGTCCGCTTGGTCTTCCCTTGAGACCAGGGCAAGCTGTATGTTCTCACTACAATTTGTATGGACTTTGCAAGTATGGTCCGACTTGCAAATTTGACCACCCCTTGACCGGATATTCTTCTTATAATTACTGTTTGAGCCTGCCCCCTCTATCTATACTTGACCCATCTCTCTTACCTTATCAAAGAAACTCTTCCACGGTTCATTCATCTGAAACCTCTCCCTCTAAATCGTCAAAATTTCCTGATTGGGTCCAGAAAACTGAGTCTGGAAGCACCAAGTCTCAGAATCCAGATACAAAAGCTCCTGAAGGTCCACCAGAACAGGCTGGTTCTCTGCTGCATTCCTCGCCAAATTCATCTGAACCTCCACAAGATCAATCTGATTGA 1353 0.4575 MLDNRQVQSNGVSNPSSENVEEAILRLKIHDNQEEGSVGHSSPYPDRPGEPDCIYYLRTGLCGYGSNCRFNHPAYSEQGAQYRGELPERVGQPDCGYFLKTGTCKYGSTCKYHHPRDRHGAGPVSLNIVGLPMRQEEKPCSYYMRTGLCKFGAACKFHHPQPASAGTVLPATGPAAFGSTGSSILPSSGLPYVGGLPAWSLPRAPYIPGPRMQGPQTYMPIVLSPSQGIVPAQGWNTYMGNMSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCKYGSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGYSSYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPDTKAPEGPPEQAGSLLHSSPNSSEPPQDQSD* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0526 450 ProSiteProfiles Zinc finger C3H1-type profile. 284 312 IPR000571 GO:0046872
Vvi12g0526 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Vvi12g0526 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872
Vvi12g0526 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 286 311 IPR000571 GO:0046872
Vvi12g0526 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 332 356 IPR000571 GO:0046872
Vvi12g0526 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Vvi12g0526 450 Gene3D - 41 121 - -
Vvi12g0526 450 Gene3D - 285 360 - -
Vvi12g0526 450 MobiDBLite consensus disorder prediction 384 450 - -
Vvi12g0526 450 MobiDBLite consensus disorder prediction 384 423 - -
Vvi12g0526 450 PANTHER PROTEIN PHOSPHATASE RELATED 18 386 - -
Vvi12g0526 450 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Vvi12g0526 450 SUPERFAMILY CCCH zinc finger 287 313 IPR036855 GO:0046872
Vvi12g0526 450 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vvi12g0526 450 MobiDBLite consensus disorder prediction 433 450 - -
Vvi12g0526 450 Gene3D - 124 171 - -
Vvi12g0526 450 ProSiteProfiles Zinc finger C3H1-type profile. 330 358 IPR000571 GO:0046872
Vvi12g0526 450 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Vvi12g0526 450 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Vvi12g0526 450 SMART c3hfinal6 284 311 IPR000571 GO:0046872
Vvi12g0526 450 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Vvi12g0526 450 SMART c3hfinal6 330 357 IPR000571 GO:0046872
Vvi12g0526 450 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vvi12g0526 450 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Vvi12g0526 450 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Vvi12g0526 450 SUPERFAMILY CCCH zinc finger 329 356 IPR036855 GO:0046872
Vvi12g0526 450 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0526 Vvi-Chr12 6379793 6385643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0526 1 418 C3H Transcription Factor Family AT1G04990 49.048 5.52e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi12g0526 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0526 - - vvi:100246519 920.613