Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0524 ATGAAAATTGAGAAAGAATTGAAGTTCTATTGTTTCAATTGTAAAATGGAGAAAACAGGTATTGAGGAAGCAAGTGGGACACCACCTTTGCCCCCATCACCAAGTATACCCCCAAATGTCAAGCCAGAGCAAGTGGGCCCTCCTAAGCGTTCTGTTATTAGTAGGAGGGGTGTTGGTACTGCTGGGCGGCGCATATCTCTGCTCACGAACCACTTCAAAGTTTCTATGAATATTTCAGATGCAATGTTTTACCAGTACAGTGTTTCTATTACTTCAGAGGATAAGAGAGTGGTTGATGGCAAGGGAATTGGGAGAAAAGTGATCGATCGACTTTACCTAACATACTCTTCTGAACTTGCTGGGAAGAAATTTGCATACGATGGAGAGAAAAGTTTGTACACAGTGGGCCCTCTGCCACAAAACAACTTTGAGTTCACAGTCGTGGTTGAGGAGTTGCTTGCAAGAAGGCATGTCCTCTGTCCAATACTGACTTCACATTCTCCTTGGTGTGGCAGTGCTAATGGTAGCCCTGGTGCAAATGGAAGTCCCAGTGGCAATGGCAAGCGACCAAAGTGTTCTTTTCGATCGAAAACTTTCAAGGTGGCAATCAGCTATGCTGCCAAAATACCTTTAAAATCTATTGTTCTTGCCCTCAAAGGAAGTGAGGTTGATAATAACGCTCAGGATGCATTGAGAGTGCTTGACATTATATTGAGACAGCAAGCAGCTAACAGGGGCTGCCTTTTGGTAAGGCAGTCATTCTTTCATGATGATTCGAGGCACTTTACTGATGTGGGGGGAGGAGTAACAGGCTGTCGGGGTTTCCATTCTAGTTTCCGTACAACTCAGGGTGGTTTGTCACTGAATATGGATGTATCTACAACTATGATCCTAACTCCTGGACCTGTGATTGATTTTCTGCTAGCTAAAAAGATGCTGAAAAATATGAGGATTAAGACAAAGCACAGCAACATGGAATTCAAAATCACTGGCCTAAGTGAGAAGCCCTGTAATCTGCAACATTTTCCTCTGAAAATGAGAAACAGCGATGATGCAAATGATGAAGATCAGACTGTGGAGATTACTGTCTATGAATATTTTACTAAACACCGTGGCATAGAACTATCCATTTCTGCTTACATGCCATGCCTTAATGTTGGAAAGCCAAAACGACCCAACTATCTACCCCTGGAGCTTTGTTTGCTAGTTTCACTCCAACGATATACAAAGGCATTGTCTATCATGCAGAGATCAACTTTAGTTGAAAAGTCAAGGCAAAAGCCTCAGGATCGAATACGAACTGTGACTGATGCTGTGAGAAACTACCAATATGATGAGGATCCTGTGCTTTCTGCATGCGGTATTTCTATTGACAGACAATTGACTCAAGTTGATGGTCGTGTCCTTGAGGCACCAAAGTTGAAGGTTGGTAATAGTGAAGATTGCATCCCTCGTAATGGAAGATGGAACTTCAATCACAAGAAACTTTTAACCCCTGTTCGAATTGAACGCTGGGCAGTTGTGAACTTTTCCGCTCGCTGTGATACCAGCCATCTTTCCCGGGAGCTTATTAACTGTGGAAGGAATAAGGGCATTCTTATTGAACGCCCTCATACACTAATTGAGGAAGATCCACAATCTAGAAGAGCTAGCCCTGTTGCAAGAGTGGAGAAGATGTTTGAAATAGTAAGGGCAAAGCTTCCAGGTCCTCCTGAATTTCTTCTGTGTGTCTTGCCGGAGAAGAAAAATTCTGAAATTTATGGACCTTGGAAGAAGAGAAGTCTTAGTGATTTTGGAATTGTCACGCAATGCATTTCCCCTACTAAAATCAATGACCAGTACCTCACAAATGTACTTCTTAAAATCAATACCAAGCTTGGAGGAACAAATTCTTTGTTGGCAATAGAGCACACTTCTCGTATCCCCTTGATTAAAGATACTCCTACAATGATTTTGGGGATGGACGTCTCTCATGGGTCTCCTGGTCAAGCAGATGTCCCATCCATAGCTGCAGTTGTTGGCTCTCGATGTTGGCCACTGATCTCAAGGTATAGAGCATCAGTAAGAACACAGTCACCTAAGGTTGAGATGATTGATGCTTTATACAAGCCTTTGGCAAATGGGAATGATGATGGAATGATCAGGGAGCTGCTTGTGGACTTCTTTCAAACCAGCAATGGACGCAAACCAGCGCAGATTGTTATATTCAGGGATGGAGTGAGTGAATCACAGTTTAATCAAGTTTTGAACATTGAGCTGGAGCAAATCATGAAGGCCTATCAGCATCTTGGGGAGGTTGATTTTCCCAAGTTCACAGTGATTGTGGCTCAAAAGAATCATCACACAAAACTATTTCAAGCTGGTGCCCCTGAAAATGTTCCACCTGGGACAGTAGTGGATACAAAAATTGTGCATCCAAGAAATTATGATTTCTACATGTGCGCTCATGCAGGGATGATTGGAACATCTCGCCCAGCACATTATCATGTCTTGCTTGATGAGATTAGCTTCTCTCCTGATGACTTGCAACATCTTATCCACTCCCTATCATATGTGTACCAAAGGAGCACAACCGCCATCTCAATTGTGGCACCCGTTTGCTATGCTCACCTTGCTGCCCAACAGATGGGGCAGTTTATTAAGTTTGATGATCTATCTGAAACTTCTTCAGCGAAGAGAGCCATCACAACAGAAGAGAGCGTCCCCGTTCCGGAGCTCCCCAGGTTGCATGAGAATGTCCGAGGTTCCATGTTCTTCTGTTGA 2763 0.4332 MKIEKELKFYCFNCKMEKTGIEEASGTPPLPPSPSIPPNVKPEQVGPPKRSVISRRGVGTAGRRISLLTNHFKVSMNISDAMFYQYSVSITSEDKRVVDGKGIGRKVIDRLYLTYSSELAGKKFAYDGEKSLYTVGPLPQNNFEFTVVVEELLARRHVLCPILTSHSPWCGSANGSPGANGSPSGNGKRPKCSFRSKTFKVAISYAAKIPLKSIVLALKGSEVDNNAQDALRVLDIILRQQAANRGCLLVRQSFFHDDSRHFTDVGGGVTGCRGFHSSFRTTQGGLSLNMDVSTTMILTPGPVIDFLLAKKMLKNMRIKTKHSNMEFKITGLSEKPCNLQHFPLKMRNSDDANDEDQTVEITVYEYFTKHRGIELSISAYMPCLNVGKPKRPNYLPLELCLLVSLQRYTKALSIMQRSTLVEKSRQKPQDRIRTVTDAVRNYQYDEDPVLSACGISIDRQLTQVDGRVLEAPKLKVGNSEDCIPRNGRWNFNHKKLLTPVRIERWAVVNFSARCDTSHLSRELINCGRNKGILIERPHTLIEEDPQSRRASPVARVEKMFEIVRAKLPGPPEFLLCVLPEKKNSEIYGPWKKRSLSDFGIVTQCISPTKINDQYLTNVLLKINTKLGGTNSLLAIEHTSRIPLIKDTPTMILGMDVSHGSPGQADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDALYKPLANGNDDGMIRELLVDFFQTSNGRKPAQIVIFRDGVSESQFNQVLNIELEQIMKAYQHLGEVDFPKFTVIVAQKNHHTKLFQAGAPENVPPGTVVDTKIVHPRNYDFYMCAHAGMIGTSRPAHYHVLLDEISFSPDDLQHLIHSLSYVYQRSTTAISIVAPVCYAHLAAQQMGQFIKFDDLSETSSAKRAITTEESVPVPELPRLHENVRGSMFFC* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0524 920 Pfam Argonaute linker 2 domain 430 475 IPR032472 -
Vvi12g0524 920 Gene3D - 468 634 - -
Vvi12g0524 920 CDD PAZ_argonaute_like 300 403 - -
Vvi12g0524 920 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 48 883 - -
Vvi12g0524 920 SUPERFAMILY PAZ domain 295 444 IPR036085 GO:0005515
Vvi12g0524 920 Pfam Piwi domain 574 881 IPR003165 GO:0003676
Vvi12g0524 920 FunFam Protein argonaute 3 641 920 - -
Vvi12g0524 920 Pfam Argonaute linker 1 domain 250 297 IPR014811 -
Vvi12g0524 920 Gene3D - 640 920 IPR036397 GO:0003676
Vvi12g0524 920 ProSiteProfiles PAZ domain profile. 310 404 IPR003100 GO:0005515
Vvi12g0524 920 Gene3D paz domain 303 407 - -
Vvi12g0524 920 Pfam PAZ domain 309 420 IPR003100 GO:0005515
Vvi12g0524 920 MobiDBLite consensus disorder prediction 27 44 - -
Vvi12g0524 920 ProSiteProfiles Piwi domain profile. 573 881 IPR003165 GO:0003676
Vvi12g0524 920 SUPERFAMILY Ribonuclease H-like 558 879 IPR012337 -
Vvi12g0524 920 MobiDBLite consensus disorder prediction 23 54 - -
Vvi12g0524 920 SMART DUF1785_2 248 300 IPR014811 -
Vvi12g0524 920 CDD Piwi_ago-like 448 873 IPR045246 -
Vvi12g0524 920 SMART Piwi_a_2 573 881 IPR003165 GO:0003676
Vvi12g0524 920 Pfam N-terminal domain of argonaute 63 238 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0524 Vvi-Chr12 6352396 6365744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0524 44 920 Eukaryotic Initiation Factors Gene Family AT5G43810 36.491 1.25e-165 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0524 K11593 - vvi:100243183 1736.47