Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0521 ATGAAACTAGAAAACAGTCACGATACCGACGACATGTGCAAAACCATCGAGGTCGCTTCCGTCGTGGTCGTCGACCACTTGTCTCCGTCCAAGGCTCTGGTCGCCGCCGGAGATGAGCTTGACAGAGATGGTGAAGAGCTATTCACGCCACCTCTCAACTTCGCCATGGTCGATAACGGCATCTTCCGCTCAGGTTTTCCCGACACAGCCAACTTCGCCTTCTTGCAAACCCTAGGTCTCCGTTCAATCATATACCTTTGCCCGGAGACGTATCCGGAGGCGAATAATGAGTTCCTCAAGTCGAATGGGATTAAGCTTTTTCAGTTTGGAATTGAAGGATATAAGGAGCCTTTTGTGAACATCCCAGAGGATACAATCCGTGAAGCGCTAAAAGTTGTTCTTGATGTAAGGAATCATCCACTTCTAATCCATTGCAAAAGAGGGAAGCACCGGACAGGTTGCGTTGTGGGATGCTTAAGAAAATTGCAAAAATGGTGCTTGTCATCTATTTTTGATGAGTACCAGCGGTTCGCAGCTGCTAAAGCTAGAGTTTCGGATCAAAGGTTTATGGAGTTGTTTGATGTCTCAAGCATGAAGCACCTACCAATTTCATTTTCATGTTCAAAGAGGTAA 633 0.4645 MKLENSHDTDDMCKTIEVASVVVVDHLSPSKALVAAGDELDRDGEELFTPPLNFAMVDNGIFRSGFPDTANFAFLQTLGLRSIIYLCPETYPEANNEFLKSNGIKLFQFGIEGYKEPFVNIPEDTIREALKVVLDVRNHPLLIHCKRGKHRTGCVVGCLRKLQKWCLSSIFDEYQRFAAAKARVSDQRFMELFDVSSMKHLPISFSCSKR* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0521 210 Pfam Tyrosine phosphatase family 50 200 IPR004861 -
Vvi12g0521 210 Gene3D Protein tyrosine phosphatase superfamily 48 197 IPR029021 -
Vvi12g0521 210 ProSitePatterns Tyrosine specific protein phosphatases active site. 143 153 IPR016130 GO:0016311|GO:0016791
Vvi12g0521 210 PRINTS Plant and fungal dual specificity phosphatase signature 48 65 IPR020428 GO:0016791
Vvi12g0521 210 PRINTS Plant and fungal dual specificity phosphatase signature 85 98 IPR020428 GO:0016791
Vvi12g0521 210 PRINTS Plant and fungal dual specificity phosphatase signature 121 135 IPR020428 GO:0016791
Vvi12g0521 210 PRINTS Plant and fungal dual specificity phosphatase signature 104 118 IPR020428 GO:0016791
Vvi12g0521 210 CDD PFA-DSP_Siw14 47 194 - -
Vvi12g0521 210 ProSiteProfiles Dual specificity protein phosphatase domain profile. 53 207 IPR020422 GO:0006470|GO:0008138
Vvi12g0521 210 PANTHER TYROSINE-PROTEIN PHOSPHATASE 48 199 - -
Vvi12g0521 210 FunFam probable tyrosine-protein phosphatase At1g05000 47 197 - -
Vvi12g0521 210 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 194 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0521 Vvi-Chr12 6322710 6327023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0521 41 210 Protein tyrosine phosphatase (PTP) family AT4G03960 77.059 1.78e-102 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0521 K18045 - vvi:100251662 429.869