Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0519 ATGGAGGGAGCAGAAAGGCAGGGAAGGTGGAAGAATCTGAAGCAACGGCTGAGATTTAAGGGCATTGGGTGTTGTGGGAGTTCGTGGAGTTACAATGCCTCCAGCATGAGCATTTTAGAAGAAATCCACCATGAAGAAGAAGAAGAATTGATCATCGGCGTGCGTCCGATTTCGGCCACCAACCGCCGAAGTTCAGCTTACGTGAGTCAGATTCCGGCAGCGTCGGGAATGAACTTAGCGTCGGCGTTAGCAGCGGAGCGTAAATCGCGGACTGTGGGTCCCACCACAGCCGCTGAGACTGCAGTGCCTCTGAAGACGTTGATGAGACTGATTGAAGAAACGGACGGTGTAGATTTGATGAAGAATAGAGACAAAGAGGGAGGAGGCGATGGTGTGTGCTGCGTGTGCATGGAGAGGAATAAAGGCGCGGCTTTTATCCCATGTGGGCACACCTTCTGCAGGGTTTGTTCCAGGGAGTTGTGGCTTAATCGAGGGTGCTGTCCTATTTGCAACCGTTCGATTCTCGAGATTCTTGATATCTTTTAG 546 0.5128 MEGAERQGRWKNLKQRLRFKGIGCCGSSWSYNASSMSILEEIHHEEEEELIIGVRPISATNRRSSAYVSQIPAASGMNLASALAAERKSRTVGPTTAAETAVPLKTLMRLIEETDGVDLMKNRDKEGGGDGVCCVCMERNKGAAFIPCGHTFCRVCSRELWLNRGCCPICNRSILEILDIF* 182
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0519 181 Pfam Zinc finger, C3HC4 type (RING finger) 131 175 - -
Vvi12g0519 181 ProSiteProfiles Zinc finger RING-type profile. 133 171 IPR001841 -
Vvi12g0519 181 SMART ring_2 133 170 IPR001841 -
Vvi12g0519 181 PANTHER OS01G0917900 PROTEIN 7 181 - -
Vvi12g0519 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 181 IPR013083 -
Vvi12g0519 181 SUPERFAMILY RING/U-box 119 178 - -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0519 1 181 C3H Transcription Factor Family AT4G22250 48.205 2.65e-48 154
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0519 - - vvi:100253430 347.821