Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi12g0519 | ATGGAGGGAGCAGAAAGGCAGGGAAGGTGGAAGAATCTGAAGCAACGGCTGAGATTTAAGGGCATTGGGTGTTGTGGGAGTTCGTGGAGTTACAATGCCTCCAGCATGAGCATTTTAGAAGAAATCCACCATGAAGAAGAAGAAGAATTGATCATCGGCGTGCGTCCGATTTCGGCCACCAACCGCCGAAGTTCAGCTTACGTGAGTCAGATTCCGGCAGCGTCGGGAATGAACTTAGCGTCGGCGTTAGCAGCGGAGCGTAAATCGCGGACTGTGGGTCCCACCACAGCCGCTGAGACTGCAGTGCCTCTGAAGACGTTGATGAGACTGATTGAAGAAACGGACGGTGTAGATTTGATGAAGAATAGAGACAAAGAGGGAGGAGGCGATGGTGTGTGCTGCGTGTGCATGGAGAGGAATAAAGGCGCGGCTTTTATCCCATGTGGGCACACCTTCTGCAGGGTTTGTTCCAGGGAGTTGTGGCTTAATCGAGGGTGCTGTCCTATTTGCAACCGTTCGATTCTCGAGATTCTTGATATCTTTTAG | 546 | 0.5128 | MEGAERQGRWKNLKQRLRFKGIGCCGSSWSYNASSMSILEEIHHEEEEELIIGVRPISATNRRSSAYVSQIPAASGMNLASALAAERKSRTVGPTTAAETAVPLKTLMRLIEETDGVDLMKNRDKEGGGDGVCCVCMERNKGAAFIPCGHTFCRVCSRELWLNRGCCPICNRSILEILDIF* | 182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi12g0519 | 181 | Pfam | Zinc finger, C3HC4 type (RING finger) | 131 | 175 | - | - | |
| Vvi12g0519 | 181 | ProSiteProfiles | Zinc finger RING-type profile. | 133 | 171 | IPR001841 | - | |
| Vvi12g0519 | 181 | SMART | ring_2 | 133 | 170 | IPR001841 | - | |
| Vvi12g0519 | 181 | PANTHER | OS01G0917900 PROTEIN | 7 | 181 | - | - | |
| Vvi12g0519 | 181 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 181 | IPR013083 | - | |
| Vvi12g0519 | 181 | SUPERFAMILY | RING/U-box | 119 | 178 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi12g0519 | 1 | 181 | C3H Transcription Factor Family | AT4G22250 | 48.205 | 2.65e-48 | 154 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi12g0519 | - | - | vvi:100253430 | 347.821 |