Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0516 ATGCATCCCAGCGCCGGGCCGGCGTCGCCGTCGTCCACGTCCAAACCCACCCTGGAAGTCATCACCCAACTCCTCTCTTTCCTCCTCCTTTCGTCTCTTTCCGTCAAGTCCTTCATCGGACGGTGGCAAGTCCTCCGCTCTAAGCTCTCAAGTCTGCAGTCCTCTATCGTTGAAATCTCCGATTCGCCCCACTGGTCCGAAAATCCTCTTTTCCAAACCCTCATTCCGAGTCTTGTATCCACTCTCCAGCGCCTCAAGTCGCTCTCTGATCAATGCGCCGACTCGGCATACGCCGGCGGGAAGCTTCTCATGCAGAGCGACCTCGACATGGCCTCCGCTTCACTCTCGAAACAGCTTCATGACCTCGACTTACTCCTCAGATCCGGTGTCCTCCGCCAATCGAATGCGATTGTTCTTTCGCAGCCTGGTCCTGGTTCGGCCAAGGAGGATTTAGGGTTCTTTGTTAGAGATCTTTTCACGAGATTACAAATCGGAGGCATCGAGTTCAAGAAGAAAGCTTTGGAGTCGCTGCTTCAGCTTCTGGCAGATGATGAAAAAGCTCCAGTTACGGTGGCGAAGGAAGGTAACATTGCGTATTTGGTGCATTTGCTTGATATGAATAATCATCCCTGTATTCGAGAACAAGCGGTTACGGCGATTTCTGTACTGGCGTCTGCCAGCGATCAATCTATAAAATGCGTTTTCGAAGAAGGCGGCTTGGGGCCTTTGTTGAGAATACTTGAAACAGGATCGGTGACACTGAAGGAGAAGGCGGCAATTGCCGTGGAGGCTATCACTGCCGATCCGGAAAATGCGTGGGCGGTTTCTGCATACGGCGGTGTCTCGATATTGATCGAAGCGTGCCGATCTGCTACTTCGTCGACGCAGACGCACGCTGTTGGTGCCCTTAGAAACGTAGCTGTCGTGGAAGATATTAGAAACTCGTTGGGGGAGGAAGGAGCTGTTCCGATACTAGTCCAATTACTGGCTTCCGGCAGCGGGCCAGCCCAAGAAAAGGCTGCGAACTGTATAGCGATCCTCGCCTCTTCCGGTGAGTATTTTAGAGCTCTGATAATACAAGAAAGAGGATTGCTGCGATTGATGCAATTGCTTCATGACTCATCAAGTTCGGAAGCGTTAGAACACGTCCTCCGAACGCTCATCTCACTCTCAGCCTCCGATTCCATATCCAGATCCTTGTCCTCATCAACCGCTTTCATCATCCAACTCTCAGAGTTGATCAAGCACGGAAACATTATTCTACAGCACAGCGCTGCCTCTCTGCTCGCTCATCTGTCCATAAGCGACGGGAACAAACGCGCCATTGCCAGTTGTTTGGCTTCTCTGGTGAAGCTAATGGAGTCGTCGAAGCCTGTGGGATTGCAGGAGGTGGCGGCGCAGGCACTCGTTTCATTGCTGGCCGTTCGATCAAATCGAAAAGAGTTGGTTAGGGATGAGAAGAGTGTGATGAGGTTGATGCAGATGCTGGATCCTAAGAGTGAACTAGTATGTAAAAAGTTTCTTGTGGCGGTCGTCGCCGCGACTCTGGCCGGAGGGAGTCAGGGTTGTCGTAAGAGGTTGGTAGCCGCCGGGGCTTACCCTCTGTTGCAGAGGCTCGCCGAAACGGAGGTCCCCGGAGCCAGAAAGGCGTTGCAAAGACTGGTCGGAAATCGGCTGAAGAGCATCTTCAGCAGGACTTGGAGGGAATAA 1710 0.5246 MHPSAGPASPSSTSKPTLEVITQLLSFLLLSSLSVKSFIGRWQVLRSKLSSLQSSIVEISDSPHWSENPLFQTLIPSLVSTLQRLKSLSDQCADSAYAGGKLLMQSDLDMASASLSKQLHDLDLLLRSGVLRQSNAIVLSQPGPGSAKEDLGFFVRDLFTRLQIGGIEFKKKALESLLQLLADDEKAPVTVAKEGNIAYLVHLLDMNNHPCIREQAVTAISVLASASDQSIKCVFEEGGLGPLLRILETGSVTLKEKAAIAVEAITADPENAWAVSAYGGVSILIEACRSATSSTQTHAVGALRNVAVVEDIRNSLGEEGAVPILVQLLASGSGPAQEKAANCIAILASSGEYFRALIIQERGLLRLMQLLHDSSSSEALEHVLRTLISLSASDSISRSLSSSTAFIIQLSELIKHGNIILQHSAASLLAHLSISDGNKRAIASCLASLVKLMESSKPVGLQEVAAQALVSLLAVRSNRKELVRDEKSVMRLMQMLDPKSELVCKKFLVAVVAATLAGGSQGCRKRLVAAGAYPLLQRLAETEVPGARKALQRLVGNRLKSIFSRTWRE* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0516 569 Pfam Armadillo/beta-catenin-like repeat 268 307 IPR000225 GO:0005515
Vvi12g0516 569 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 566 - -
Vvi12g0516 569 SUPERFAMILY ARM repeat 196 546 IPR016024 -
Vvi12g0516 569 Gene3D - 162 311 IPR011989 -
Vvi12g0516 569 SMART arm_5 268 308 IPR000225 GO:0005515
Vvi12g0516 569 SMART arm_5 183 225 IPR000225 GO:0005515
Vvi12g0516 569 SMART arm_5 309 349 IPR000225 GO:0005515
Vvi12g0516 569 SMART arm_5 351 392 IPR000225 GO:0005515
Vvi12g0516 569 SMART arm_5 435 474 IPR000225 GO:0005515
Vvi12g0516 569 SMART arm_5 227 267 IPR000225 GO:0005515
Vvi12g0516 569 Gene3D - 312 564 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0516 Vvi-Chr12 6277968 6279677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0516 307 541 U-box Gene Family AT2G23140 27.311 1.64e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0516 - - vvi:100263717 979.163