Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0503 ATGAAGAACAGCTTGGTGTCCCTTGCCAGAAGAGCACTCACGGTACAAAACCCAGCTGCAGACTGGCGTTGCTTTTGTTCTTCGCCATCATTCCCAACTCCTCCTTCCAATACAAAGCTCTTTGTAGCCGGTTTGTCATGGTCAGTTGATGAGAAGTCCTTGAAGGATGCTTTCTCTTCTTTTGGGGATGTCACTGAAGTGAGGATAATGTACGATAAGGATAGTGGTAGATCAAGAGGCTTTGGGTTTGTTTATTTCTCAAAAGAAGTTGATGCCAGATCTGCGAAAGATGCCATGGATGGAAAGGCATTCTTAGGTCGACCATTGAGGGTCAGTTATGCTTTGGAGAAGGTACGCGGTGGACCAATTGTTGTCCCGCGCCGTTTAAATGGTGGAGATGACAACAACAGTCGAAATTCTTGA 423 0.4586 MKNSLVSLARRALTVQNPAADWRCFCSSPSFPTPPSNTKLFVAGLSWSVDEKSLKDAFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAKDAMDGKAFLGRPLRVSYALEKVRGGPIVVPRRLNGGDDNNSRNS* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0503 140 SMART rrm1_1 39 112 IPR000504 GO:0003723
Vvi12g0503 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Vvi12g0503 140 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 8 122 - -
Vvi12g0503 140 CDD RRM2_NsCP33_like 39 114 - -
Vvi12g0503 140 SUPERFAMILY RNA-binding domain, RBD 33 124 IPR035979 GO:0003676
Vvi12g0503 140 Gene3D - 28 140 IPR012677 -
Vvi12g0503 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0503 Vvi-Chr12 6136022 6138381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0503 40 95 C2H2 Transcription Factor Family AT2G19380 42.857 3.99e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0503 - - vvi:100265324 270.396