Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0501 ATGCCCCAAGGCAGCTGCAACCACAACAACTCAGGTTGTTATTTCATGGAAGGCAGCAACAGCAACACCACCAATAATCATGACTGCACCAGCTGTTCTATGAAAGCTAAGATCATGGCTCATCCCCACTACCCTCGCCTCTTGGCTGCCTATGTTAATTGCCAAAAGGTGGGGGCACCGCCGGAAGTGGTAGCCAGGTTAGAAGAGGCTTGTGCTTCTGAGGAAGCCATGGGTAGGTCTGCAACAAGCTGCGTAGGAGAAGACCCTGCACTGGATCAGTTCATGGAGGCATATTGTGAGATGCTCACCAAGTACGAGCAGGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCCTATCAAGGATCGAGTGCCAGTTCAAAGCCCTAACTGTTGCCCCTTCAGATTCTGTTTGTGGTAGTTATGCGGGTCGGGTTGGATCATCTGAGGAGGAGGTTGATGGGAATGACACTTGCATCGACCCTCAAGCCGAAGACAGGGAGCTGAAGGGCCAGCTTCTGCGCAAGTACAGTGGATATCTGGGTAGCCTGAAGCAGGAGTTCCTGAAGAAGAAAAAGAAAGGGAAACTACCCAAGGAAGCCAGGCAGCAGTTGCTTGACTGGTGGAGCAGACACTACAAGTGGCCTTACCCATCGGAGTCCCAAAAACTGGCACTTGCAGAATCGACTGGTCTAGATCAGAAACAGATAAACAACTGGTTCATCAATCAGAGGAAACGCCACTGGAAACCTTCAGAGGATATGCAGTTTGTGGTGATGGACGCAACCCATCCCCACTACTACATGGACAGCGTTATGGGCAATCCGTTCCCCATGGACTGCACGCCTACGCTTCTATGA 861 0.5087 MPQGSCNHNNSGCYFMEGSNSNTTNNHDCTSCSMKAKIMAHPHYPRLLAAYVNCQKVGAPPEVVARLEEACASEEAMGRSATSCVGEDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFLSRIECQFKALTVAPSDSVCGSYAGRVGSSEEEVDGNDTCIDPQAEDRELKGQLLRKYSGYLGSLKQEFLKKKKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYMDSVMGNPFPMDCTPTLL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0501 286 Pfam KNOX1 domain 34 73 IPR005540 GO:0003677|GO:0005634
Vvi12g0501 286 SMART HOX_1 190 255 IPR001356 GO:0003677
Vvi12g0501 286 ProSiteProfiles ELK domain profile. 168 188 IPR005539 GO:0003677
Vvi12g0501 286 ProSiteProfiles 'Homeobox' domain profile. 188 251 IPR001356 GO:0003677
Vvi12g0501 286 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 257 - -
Vvi12g0501 286 Pfam Homeobox KN domain 208 247 IPR008422 GO:0003677|GO:0006355
Vvi12g0501 286 SMART KNOX2_2 81 132 IPR005541 GO:0003677|GO:0005634
Vvi12g0501 286 CDD homeodomain 200 252 IPR001356 GO:0003677
Vvi12g0501 286 Gene3D - 193 255 - -
Vvi12g0501 286 SUPERFAMILY Homeodomain-like 190 265 IPR009057 -
Vvi12g0501 286 SMART ELK_2 168 189 IPR005539 GO:0003677
Vvi12g0501 286 FunFam Homeobox protein knotted-1-like 2 193 255 - -
Vvi12g0501 286 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981|GO:0006355
Vvi12g0501 286 Pfam KNOX2 domain 84 131 IPR005541 GO:0003677|GO:0005634
Vvi12g0501 286 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Vvi12g0501 286 Pfam ELK domain 168 189 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0501 Vvi-Chr12 6115558 6119145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0501 34 286 Homeobox Transcription Factor Family AT1G62360 78.244 2.15e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vvi12g0501 KNOX2 9.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0501 - - vvi:100248152 586.645