Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0500 ATGGCCAAGACCAAGCCTGGCAAAAAGGACTTGGATTCTTACACCATCAAGGGCACCAACAAGGTTGTTAGAGCTGGAGATTGTGTGCTAATGCGACCATCAGACTCTGATAAGCCTCCCTATGTTGCGCGTGTGGAGAAAATTGAGGCAGATCATAGGAACAATGTGAAGGTTCGGGTGCGGTGGTATTATCGGCCAGAGGAGTCAATTGGGGGGCGAAGGCAGTTCCATGGAGCCAAGGAGCTGTTTTTGTCCGACCACTATGATGTGCAGAGTGCCCACACTATAGAAGGGAAGTGCATTGTTCACTCATTTAAGAATTATACTAAGCTTGAGAATGTTGGGGCTGAGGATTACTTCTGTAGGTTCGAGTACAAGGCTGCAACAGGAGGGTTCACTCCCGACCGGGTTGCTGTGTATTGTAAGTGCGAGATGCCTTATAATCCGGACGACCTTATGGTGCAGTGCGAAGGATGCAAGGACTGGTTTCATCCTTCTTGCATGGGTATGACCATAGAAGAGGCAAAGAAATTGGACCACTTTTTGTGTTCTGACTGTTCATCTGATGATGATGCCAAAAGATCGTTGAATGCATTCCCAGTATCACCATCTGAGGCTAAGGTGGAACCAAAGCGCAGGAAGAGATGA 648 0.4784 MAKTKPGKKDLDSYTIKGTNKVVRAGDCVLMRPSDSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYFCRFEYKAATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPSCMGMTIEEAKKLDHFLCSDCSSDDDAKRSLNAFPVSPSEAKVEPKRRKR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0500 215 SUPERFAMILY FYVE/PHD zinc finger 130 189 IPR011011 -
Vvi12g0500 215 PANTHER OS08G0421900 PROTEIN 1 206 - -
Vvi12g0500 215 Gene3D - 1 132 IPR043151 -
Vvi12g0500 215 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Vvi12g0500 215 CDD BAH_BAHCC1 22 156 - -
Vvi12g0500 215 FunFam Chromatin remodeling protein EBS 1 132 - -
Vvi12g0500 215 MobiDBLite consensus disorder prediction 193 215 - -
Vvi12g0500 215 Pfam PHD-finger 140 188 IPR019787 -
Vvi12g0500 215 SMART BAH_4 21 136 IPR001025 GO:0003682
Vvi12g0500 215 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Vvi12g0500 215 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Vvi12g0500 215 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 204 - -
Vvi12g0500 215 Pfam BAH domain 23 135 IPR001025 GO:0003682
Vvi12g0500 215 SMART PHD_3 140 187 IPR001965 -
Vvi12g0500 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 200 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0500 Vvi-Chr12 6105323 6111085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0500 41 132 Core DNA Replication Machinery Family AT4G14700 30.108 8.10e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi12g0500 BAH 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0500 K25868 - vvi:100253455 458.759