Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0494 ATGAAACAGAAGGTGGGTTTAGGGTTTTTTGTACTGCTCTCCGTTTTCTGTGCAGTTGATTCGCAGTGCAGTCGCGGCTGTGATCTTGCTCTGGGCTCATACTATGTCTGGCAAGGTTCCAACCTCACTTTTATCTCTCAGCTATTCCAGACAACGATTTCTGAAATTCTCAGCTACAACTCACAAATCGCTAATCAAGATAGTGTTGAAGCCGATACCAGAATCCGCGTGCCTTACTCCTCATGTGATTGCATCAATGGAGAATTTCTGGGCAAAGTGTTCAACTACACGGTGCAGTCCGGTGATACGTACGATCTTGTTGCGGAGACATACTATTCAAATCTGACCACTTCGGCGTGGTTGCAGAACTTCAATAGCTATGCCGCCAATCAAATTCCTGATACGGATGCTTATCTGAATGTGACTTTAAATTGTTCTTGTGGCAATAGCACCGTTTCCAAGGATTATGGGTTGTTCTTGTCCTACCCGCTTCGCCCAGAGGATAATTTGACTTCGGTTGCAGAGTCAGAGGGTTTGAATGCTTCCTTGTTGCAGAGTTACAATCCGGATTCCAATTTTAGTGCTGGGAGTGGGCTTGTTTACATTCCTACTAAAGATACCAGTGGAAGCTATCGGGCCCTGAAATCCAGCACAGGTGATTTCCTCTTTTCTGCATACTGGTTCGCAGGATTAGCAGGTGGTGTGATTGCTGGCATATCTATAGCAGCAGTAGTAGGAGTGCTGTTATTGACAGTTTGTATATATATTGGATTTTACAGAAAGAGGAAGGTGAAGGAAGCAGCATTGCTTCCAACTGAAGAACATTCTCTTCAACCTGGGCATGGTCCTGGAATTGCTTCAGATAAAGCTGTAGAATCAACAGGTCCTGCTTTTGGTTCTTCTGCAGGTCTTACAGGCATTACTGTGGACAAATCAGTGGAGTTCTCATATGAAGAACTTGCTAAGGCTTCTGATAATTTTAATTTGGCTAATAAGATCGGTCAAGGTGGCTTTGGATCTGTTTACTATGCAGAGCTGAGGGGCGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAGAGAATTTCTTGCTGAATTAAAAGTTTTGACACATGTGCATCACCTAAATTTGGTGCGCTTGATTGGATATTGTGTTGAGGGTTCTCTTTTTCTAGTCTATGAATACATTGAGAATGGCAACTTAAGCCAACATTTGCGTGGCTCAGGAAGGGACCCATTGCAATGGTCTAGTAGGGTTCAAATTGCCCTTGATTCAGCAAGAGGTCTTGAATATATTCATGAGCATACTGTTCCTGTGTATATCCATCGTGATATTAAGTCAGCAAATATACTGATAGATAAGAATTTCCATGGAAAGGTTGCAGATTTTGGTCTAACAAAATTGACTGAAGTTGGGAGTTCATCCCTACCCACACGTCTTGTGGGTACATTTGGATACATGCCACCAGAATACGCTCAATATGGTGACGTCTCTCCCAAAGTAGATGTATATGCTTTTGGGGTTGTCCTTTATGAACTTATTTCTGCCAAGGAGGCTGTGGTCAAGGACAATGGTTCTGTTGCTGAATCAAAGGGCCTTGTGGCTTTGTTCGAGGATGTGCTAAATAAGCCAGATCCACGAGAGGACCTTCGCAAACTAGTTGACCCTAGGCTTGAAGATAACTACCCACTCGACTCTGTGCGCAAGATGGCCCAACTTGCCAAAGCATGCACCCAGGAAAATCCTCAGCTAAGACCAAGCATGAGAACCATCGTGGTTGCCCTAATGACTCTTTCATCCTCAACAGAGGACTGGGATGTTGGTTCCTTCTACGACAACCAAGCCCTCGTCAATCTAATGTCTGGAAGGTAG 1878 0.4398 MKQKVGLGFFVLLSVFCAVDSQCSRGCDLALGSYYVWQGSNLTFISQLFQTTISEILSYNSQIANQDSVEADTRIRVPYSSCDCINGEFLGKVFNYTVQSGDTYDLVAETYYSNLTTSAWLQNFNSYAANQIPDTDAYLNVTLNCSCGNSTVSKDYGLFLSYPLRPEDNLTSVAESEGLNASLLQSYNPDSNFSAGSGLVYIPTKDTSGSYRALKSSTGDFLFSAYWFAGLAGGVIAGISIAAVVGVLLLTVCIYIGFYRKRKVKEAALLPTEEHSLQPGHGPGIASDKAVESTGPAFGSSAGLTGITVDKSVEFSYEELAKASDNFNLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASREFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLQWSSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGSSSLPTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAVVKDNGSVAESKGLVALFEDVLNKPDPREDLRKLVDPRLEDNYPLDSVRKMAQLAKACTQENPQLRPSMRTIVVALMTLSSSTEDWDVGSFYDNQALVNLMSGR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0494 625 Gene3D LysM domain 23 85 IPR036779 -
Vvi12g0494 625 Pfam Protein tyrosine and serine/threonine kinase 328 596 IPR001245 GO:0004672|GO:0006468
Vvi12g0494 625 FunFam PTI1-like tyrosine-protein kinase 3 398 611 - -
Vvi12g0494 625 ProSiteProfiles LysM domain profile. 32 77 IPR018392 -
Vvi12g0494 625 Gene3D Transferase(Phosphotransferase) domain 1 398 616 - -
Vvi12g0494 625 SMART serkin_6 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0494 625 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Vvi12g0494 625 FunFam LysM receptor kinase 2 306 397 - -
Vvi12g0494 625 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 3 611 IPR044812 GO:0019199|GO:0045087
Vvi12g0494 625 SUPERFAMILY Protein kinase-like (PK-like) 309 597 IPR011009 -
Vvi12g0494 625 CDD STKc_IRAK 333 594 - -
Vvi12g0494 625 Pfam LysM domain 34 78 IPR018392 -
Vvi12g0494 625 Gene3D Phosphorylase Kinase; domain 1 312 397 - -
Vvi12g0494 625 SMART LysM_2 33 78 IPR018392 -
Vvi12g0494 625 ProSiteProfiles Protein kinase domain profile. 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0494 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0494 Vvi-Chr12 6048652 6054569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0494 1 625 Receptor kinase-like Gene Family AT3G21630 59.027 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi12g0494 PK_Tyr_Ser-Thr 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0494 - K13429 vvi:100255092 1196.8