Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0483 ATGCATCCTTTGGTTGATCATTCTAAACTACAAAGGCCTAGTATTAATATTTGTTTATCTCCTATAAATCGAGGAATACGTGCGGATTTAGCACCATTGTTATGGAACTCTAGTGGTACCATATATTTACTCTTACAGGAAATAACATCGGCATACCGTATCCTATCATCCCCTGAACTTGTAGCAAGAGCAACTAACAATGTATGCAATGCACTTGCTCTACTTCAGTGTGTCGCTTCTAACCCAAATACGAGGATGAATCTCATTCAAGCTAACATACCATGTTACTTATACCCATTCCTCGGAGTCAAGAACAAAGAAAAACCTTATGAATATTTGAGGCTTACCAGCTTGGGTGTTATTGGTGCCCTTGTGAAGGTTGATAATGCAGAAATTGTTCACTTCCTTCTCCAATCAGAGATAGTTCCTTTATGCCTACGTTGTATGGAAGTGGGCAATGAACTATCAAAAACAGTTGCTACTTTTATAATTCAGAAAATTCTGGTGCAAGATGAGGGGTTGAGGTACTTTTGCTCCTTTGCAGAACGCTTTTTTGCATTAGCCCGTGTTATGGGAACCATGGTTGACAACCTTGTCGAAGAACCTTCGCAAAGGCTACTAAAACACATAATTCATTGTTATGTTAGGTTGTCAGGCTGTCCAAGAGCTTGTGATGGGTTTAAAATTTGTCTTCCTATAAGGTTGAGGGATGCTGCTATCCTTAACCTTGTTCGAGATGACCCAATTGCACTTGAGTGGCTAAGACAATTGTTTTTCAATATTGCAACTGGAAATCGTGTTTCATCATCAGCCATTGGAGAAACACTTGGGAGCTTGCTTGCAAGCTAG 849 0.3981 MHPLVDHSKLQRPSINICLSPINRGIRADLAPLLWNSSGTIYLLLQEITSAYRILSSPELVARATNNVCNALALLQCVASNPNTRMNLIQANIPCYLYPFLGVKNKEKPYEYLRLTSLGVIGALVKVDNAEIVHFLLQSEIVPLCLRCMEVGNELSKTVATFIIQKILVQDEGLRYFCSFAERFFALARVMGTMVDNLVEEPSQRLLKHIIHCYVRLSGCPRACDGFKICLPIRLRDAAILNLVRDDPIALEWLRQLFFNIATGNRVSSSAIGETLGSLLAS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0483 282 Gene3D - 7 265 IPR011989 -
Vvi12g0483 282 Pfam Cell differentiation family, Rcd1-like 26 261 - -
Vvi12g0483 282 PANTHER UNCHARACTERIZED 23 263 IPR007216 GO:0006402|GO:0030014
Vvi12g0483 282 SUPERFAMILY ARM repeat 66 224 IPR016024 -
Vvi12g0483 282 FunFam Cell differentiation protein-like protein 3 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0483 Vvi-Chr12 5931092 5935262 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vvi12g0483 Rcd1 2.5e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0483 K12606 - vvi:100267046 516.538