LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0469	ATGGCCAAAGGCAGTGGACTCTCCTTTGGGTCAGATCCAATCTTCTTCCTTCACAAACCAATAGTTATAAATTCATTTCCGGAGGATCACAGCAAGAGGTTTGCGGCCATGGATGCCACTAAAAACCAGTCCACTACCACTATTCAATTCCCAGTCAACCTCAACTGTGCTCACCCAGATTCTCCGGTTCCCGACGACGAAAAGCCCAGAATTGTCGATGAGATGGACTTTTTTGCTGATAAAAACCGCGACTCCAAGCCACCCACTACAGATAACAAGAACTCTCCCTATTATTTCAATGTAAACACTGGCTTGCACCTTCTTACTGCTAATACCAGCAGCGATCAGTCCATGGTGGATGATGGGATGTCGCCCCCGAACGTGGATGACAAGCGAGTTAAGAATGAGCTGGTGGTTCTTCAAGCTGAGATCGAGCGGATGCACGCAGAGAATGAGCGATTGAGGAGCATGCTGAACCAGGTTACTAACAACTACAACGCACTCCAGGTGCATATGGTGGCACTGATGCAAGATCAGAAGGCGGAGAACAATGAAGAACATGATCAGAAGCATAGTGGTAATAATAACGGAGGAGTTGTGGTGCCTAGACAGTTTATTGATCTTGGCCTTGCTGCTAAAGCTGAAGTCGAAGAGCCTTCGCTGTCTTCATCAGAAGGAAGGAGCGGTGACCGATCCGGATCACCCATAAACAACGGAGAAGTGGGTTCGAAGGAGTTGGAGCTGAGGAAGAATGAGAAGAAGGAATACAGCAGTGGAATTGGAAGAGAAGAAAGCCCAGATCAAGGATCCCAATGGGGAGCTAACAAGGTTCCCAGGTTGAATCCCTCCAAAAATGTTGATCAAACCGAAGCAACCATGAGGAAAGCCCGTGTCTCAGTTCGAGCACGATCTGAAGCACCTATGATCACTGATGGATGCCAATGGAGGAAGTATGGGCAGAAGATGGCAAAGGGAAATCCATGCCCTCGAGCTTATTATCGATGCACCATGGCTGCAGGTTGTCCGGTCCGCAAACAAGTGCAAAGATGCGCGGAGGATCGGAGTATTCTCATCACCACATATGAAGGTAATCACAACCACCCACTGCCGCCTGCTGCCATGGCAATGGCGTCGACCACTTCGTCTGCAGCGCGAATGCTACTGTCCGGGTCAATGCCCAGTGCTGATGGGCTAATGAACTCCAATTTCCTCGCCAGGACCGTCCTTCCTTGCTCCTCTAGCATGGCTACTATATCAGCTTCAGCCCCATTCCCTACTGTTACATTAGACCTTACTCAAAACCCCAACCCCTTACAATTCCAAAGGCCACCAAGCCAATTCTATGTCCCCTCCCCCAACCCAACTCAGAACCTCGCCGGGCCGGCCGCTGCAACACCCTCTTCACTGCTGCCTCAAATCTTCAATCAAGCCCTTTACAATCAGTCAAAGTTCTCTGGCCTGCAAATGTCTCAAGACATGGAAGCAGCTCAATTACCGACCCACCACCAACCATCATCACAGCAACAGTCACAGCAGAACTCTCTGGCTGAAACGGTGAGTGCAGCAACTGCTGCCATTACAGCTGACCCCAACTTCACTGCAGCACTAGCGGCTGCCATCACCTCCATTATTGGTGGTGCTCAACCTCAACCAAACAGTAGTACTAACAATAACGCCAACACCACAGTCCCCACCACCAGCAACAGTGGCAACATTACTACTAGCAACAGCAATAGTAATGGCAGCAACAAACTCTGCAATTCAAAATTTCCAGGGAACTGA	1782	0.4955	MAKGSGLSFGSDPIFFLHKPIVINSFPEDHSKRFAAMDATKNQSTTTIQFPVNLNCAHPDSPVPDDEKPRIVDEMDFFADKNRDSKPPTTDNKNSPYYFNVNTGLHLLTANTSSDQSMVDDGMSPPNVDDKRVKNELVVLQAEIERMHAENERLRSMLNQVTNNYNALQVHMVALMQDQKAENNEEHDQKHSGNNNGGVVVPRQFIDLGLAAKAEVEEPSLSSSEGRSGDRSGSPINNGEVGSKELELRKNEKKEYSSGIGREESPDQGSQWGANKVPRLNPSKNVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMPSADGLMNSNFLARTVLPCSSSMATISASAPFPTVTLDLTQNPNPLQFQRPPSQFYVPSPNPTQNLAGPAAATPSSLLPQIFNQALYNQSKFSGLQMSQDMEAAQLPTHHQPSSQQQSQQNSLAETVSAATAAITADPNFTAALAAAITSIIGGAQPQPNSSTNNNANTTVPTTSNSGNITTSNSNSNGSNKLCNSKFPGN*	594

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0469	593	Gene3D	WRKY domain	294	371	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0469	593	MobiDBLite	consensus disorder prediction	221	239	-	-
	Vvi12g0469	593	MobiDBLite	consensus disorder prediction	215	296	-	-
	Vvi12g0469	593	FunFam	probable WRKY transcription factor 31	294	371	-	-
	Vvi12g0469	593	MobiDBLite	consensus disorder prediction	181	200	-	-
	Vvi12g0469	593	SUPERFAMILY	WRKY DNA-binding domain	302	370	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0469	593	Coils	Coil	130	171	-	-
	Vvi12g0469	593	ProSiteProfiles	WRKY domain profile.	304	370	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0469	593	Pfam	WRKY DNA -binding domain	311	368	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0469	593	MobiDBLite	consensus disorder prediction	495	516	-	-
	Vvi12g0469	593	MobiDBLite	consensus disorder prediction	243	261	-	-
	Vvi12g0469	593	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	109	561	IPR044810	GO:0003700
	Vvi12g0469	593	MobiDBLite	consensus disorder prediction	433	464	-	-
	Vvi12g0469	593	SMART	WRKY_cls	309	369	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi12g0469	593	MobiDBLite	consensus disorder prediction	263	289	-	-
	Vvi12g0469	593	MobiDBLite	consensus disorder prediction	548	593	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g0469	Vvi-Chr12	5678927	5681082	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0469	1	558	WRKY Transcription Factor Family	AT1G62300	48.680	1.04e-147	436

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vvi12g0469		WRKY	2.1e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0469	-		-	vvi:100243099	1074.31