Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0468 ATGGACTGGACCAGAGGCCACACCTTAGGCTCTGGCTCCTCTGCCACAGTCTCCCTCGCCAATTCTCTCCGGTCTGGCGACGTGTTTGCTGTCAAGTCGGTGGAGCTATCTCGGTCGGAGTCACTGCAGAGGGAGGAGAGAATCCTATCTTCTTTGAGGTCTCCTTATATAGTTGGCTACAAGGGGTGTGACATTACCAGGGAGAACAAGAAGCTTATGTACAATCTTTTCATTGAGTACATGCCCGGTGGCACTCTTGGTGATGCAATTCGGAGGGGTGGAGGTCAGCTTCATGAATCGATGATTGGGATTTATGCGCGACAAATTGTACAGGGATTGGATTACATTCACTCACGAGGCTTAGTGCATTGTGATATTAAAGGCCAGAACGTGCTAATTGGAGAAGATGGTGCAAAAATTGCTGATTTTGGGTGTGCCAAGTGGACTAACGGCAAGGATGACAGGAAGGTGCCGATTGCCGGAACACCGTTCTTCATGGCACCGGAGGTAGCGCGCGGCGAAGATCAGGGATACCCTTCTGATGTATGGGCTCTTGGATGTACAATAATTGAAATGGCCACTGGGGGCGCTCCATGGCCTAATGTGGCAAACGCAGTTGCAGCTCTTTATCGAATCGGATTCTCTGAAGAGCTGCCATGGATTCCAAGTTTTCTCTCCGACCAAGCAAAGGATTTTCTAAGCAAGTGCTTACGGAGAGATCCAAAAGAGAGGTGGACAGCAAGTCAGCTTCTCAAGCATCCATTTGTGGGAGAATTGAATCCTCAGGCAAAGCAAGTTCAAGAATCCTATTCAGATTCTCCAACAAGTATTCTAGACCAAAACTTTTGGAGCTCATTGGAGGAATCAGAAGCACAAGGCTACTTGAAGCAGGCAAGTTTTTCAAATTCTCCAGCAGAAAGGATCCGGAAACTATGGACGTTTTCAAGGGTAGAAAACTGGACAAGGGATGATAATTGGGTCACAATCAGAGGCAGTACCAATGAGGAAAGCAACGTACCCGCTGATTACATGGAAGATGAAGCGAGTCCAGTTTCCAGGTCGGAGGCAGTTTCGAGTAGTCATGATGTGGAAAAGGTAGAAAGCCATGGTGATGGAGAGGAGATGGAGGATTTCTTAGATAGCAAATTTAGTTGTAGGACATGTATGAAAGATAGTGTTGTAGTGAGCAACTTCAATTTTGAGATAGACAAAGAACACTTGTTAATTACTTCAACTTCAATCTCAAACTTCTTAGCATCCTAA 1263 0.4632 MDWTRGHTLGSGSSATVSLANSLRSGDVFAVKSVELSRSESLQREERILSSLRSPYIVGYKGCDITRENKKLMYNLFIEYMPGGTLGDAIRRGGGQLHESMIGIYARQIVQGLDYIHSRGLVHCDIKGQNVLIGEDGAKIADFGCAKWTNGKDDRKVPIAGTPFFMAPEVARGEDQGYPSDVWALGCTIIEMATGGAPWPNVANAVAALYRIGFSEELPWIPSFLSDQAKDFLSKCLRRDPKERWTASQLLKHPFVGELNPQAKQVQESYSDSPTSILDQNFWSSLEESEAQGYLKQASFSNSPAERIRKLWTFSRVENWTRDDNWVTIRGSTNEESNVPADYMEDEASPVSRSEAVSSSHDVEKVESHGDGEEMEDFLDSKFSCRTCMKDSVVVSNFNFEIDKEHLLITSTSISNFLAS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0468 420 SUPERFAMILY Protein kinase-like (PK-like) 2 288 IPR011009 -
Vvi12g0468 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vvi12g0468 420 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0468 420 MobiDBLite consensus disorder prediction 331 373 - -
Vvi12g0468 420 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0468 420 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0468 420 CDD STKc_MAPKKK 2 256 - -
Vvi12g0468 420 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 341 - -
Vvi12g0468 420 Gene3D Transferase(Phosphotransferase) domain 1 2 325 - -
Vvi12g0468 420 MobiDBLite consensus disorder prediction 358 373 - -
Vvi12g0468 420 FunFam Mitogen-activated protein kinase kinase kinase 17 2 307 - -
Vvi12g0468 420 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0468 Vvi-Chr12 5671494 5672756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0468 2 351 MAP Kinase Kinase Kinase AT5G55090 48.387 1.99e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g0468 Pkinase 1.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0468 K20716 - vvi:100248217 814.298