Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0459 ATGGAGCTTCGCTCTCGAAGAATTCTCTCTGGAGCCTCTTTCGAAGGAAATGGTGTCCAGCTTAGCGAAGGCTCTGATGAAGAGTACCGTGTCTCGGATTCTGATTGTAATGGCATCATCTGTGCAGGTGAAGGCTCTTCAAGTACAATAGAAGAGAGTAAAGAGAGAGTGGTATTTGACTTAAATATTGAGGCTAATGATATGGACAGAGGTAGTGAAGGTGATGAAAGTGGTGATTTTGATTCTAGTGGGCTTGTAAAGAGGAGGAAAGTGGGGAAAAGGAAGAAAAGGGGACGGCAGAGATGCAAGAGGGAGGAAATGAGAGGGGAAGAAAAAGAGAAGGAATTAGGCAATGTGCAAGATTCAGAGGTTCAAGAGGATGAAGGAGTTTTGGAGATTGACTTTCTTGGGCTTCAACTTGGTAGGGTTGGCCATCTTGGATCAAAGAAAAATGATAAGAAGAGGAAAAAAAGTGGTGATTTGAAACCAACACTGATGTGGGAAATTTGGGAAGAGGAGCACGACAAATGGATTGACATGAACTTAACAGAAGATGTAGATTTGGATCATCAAAATGAACTAGTGTCTGAAACTGCTGATGCACCATCAGATTTGATCATGCCTTTGCTTAGGTACCAAAAAGAATGGCTGGCCTGGGCTTTGAAGCAGGAAGAGTCGACAACTAGAGGGGGAATCCTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCTATTGCACTTGTGCTTTCCAAACGGGAAATCTCCCAGAAAATTTGTGAACCAAAAGTAGTTTTGCGTGCACCTGGTTCTTCCATGGATTTGCCCAAAATTAAAGGTACCCTAGTAATCTGTCCTGTGGTTGCTGTGCTTCAGTGGGTAAATGAGATTGGCCGGTTCACCGTGAAAGGCAGCACCAAGGTGCTGGTTTACCATGGGGCCAATAGAGGGAAGAGTATTGGCCAGTTTTCAGAATATGATTTTGTTATAACCACATACTCCATTGTTGAAGCTGAGTATAGGAAAAATGTAATGCCACCAAAACAGAAGTGTGTGTTTTGTAGGAAGTTATTTTATCCACACAAGATGTCCATTCACTTGAGATATTTCTGCGGGCCAGATGCCATTAAGACAGATAAACAGTCTAAACAAAAGAAAAAGGAGCCAAAACTTGAACTAAAAATATCGGATTCTGTAGAAGACAATGGCGGTGAATGTGAGGGTGAAAAAAGGAAGAAAGATCAGCCAAAGCCTAGGAAGAATTACAAGCCAAAAAAACATATGGGATTTGGTCCTTCCATTGAGAATTCAGCAGTTGATGAACAAAGCACGTCCACAAGGAAATCAATTTTGCACTCTGTGAAATGGGACCGCATTATTTTGGATGAGGCACATTTTATAAAAGATAGACGCTCTAATACTGCAAAAGCTGTTCTTGCTTTAGAGTCTGAATACAAGTGGGCTTTAAGTGGCACTCCCCTTCAAAATCGTGTTGGAGAACTTTACTCATTAATCCGGTTCCTGCGAATAATCCCATACTCGTATTACTTGTGTAAGGATTGTGATTGCCGAACACTTGATTATAGTTCCTCAACAGAATGCCCTAACTGTGAGCATAAATCTGTGCGGCATTTTTGCTGGTGGAATAAATATGTGGCTACACCGATCCAAGCAATGGGGAATATAGGTGAAGGACAAAGAGCCATGATATTGCTGAAACACAAGATTTTGAAAAGCATACTTCTAAGACGTACTAAAAAGGGAAGGGCTGCAGATCTTGCACTGCCTCCTAGAATTGTTTCATTGAGGCGGGACACTCTGGATATCAAGGAAGAAGATTATTACCAATCATTATACAATGAAAGTCAGGCACAGTTTAATACATATGTTGAAGCAGGAACATTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGACTGCGACAGGCAGTTGATCATCCTTATCTTGTAGTATATTCAAGAACTTCTACTCTAAGGGCAGGAAACATTGTTGATACTGAGAATGGTGAACAAGTATGTGGAATTTGTAATGACCCACTAGAGGATCCTGTGGTTACATCTTGTGCCCATGTCTTTTGTAAGGCATGTTTGAATGACTTCTCCACTACCTTGGGACAAGTTTCATGCCCTTCATGTTCAAAACCACTAACAGTTGATTTGACTACGAGTATGGATCCTGGAGATCGAGACATGAAAACAACCATAAAGGGTTTTAAACCATCAAGTATTTTGAATAGAATCCGGCTTGACGATTTTCAGACGAGCACAAAAATAGATGCTTTGAGGGAAGAAATCAGATTCATGGTTGAAAGGGATGGTTCTGCAAAAGGAATTGTTTTCAGCCAGTTCACATCATTCTTGGATTTGATAAACTACTCCCTCCAGAAGTCTGGCATAACTTGTGTTCAATTAGTTGGAAGCATGTCCATGGCTGCAAGAGATGCTGCCATTTCTAGATTTACTAATGAACCAGATTGCAAGATTTTCCTGATGAGCTTAAAGGCTGGAGGGGTTGCTCTCAATCTTACAGTTGCTTCACACGTTTTCTTGATGGATCCTTGGTGGAACCCAGCAGTGGAGCGGCAAGCACAAGATAGAATCCACCGGATAGGACAGTATAAACCAATCAGAATTGTGAGATTTGTAATTGAGAAAACAATTGAGGAAAGGATTCTGAAACTACAAGAGAAGAAGGAACTAGTGTTTGAGGGGACTGTGGGGGGCTCTTCGGAGGCTTTGGGTAAATTAACAGAGGCAGACTTGAAATTCCTATTCATCACCTAG 2811 0.4137 MELRSRRILSGASFEGNGVQLSEGSDEEYRVSDSDCNGIICAGEGSSSTIEESKERVVFDLNIEANDMDRGSEGDESGDFDSSGLVKRRKVGKRKKRGRQRCKREEMRGEEKEKELGNVQDSEVQEDEGVLEIDFLGLQLGRVGHLGSKKNDKKRKKSGDLKPTLMWEIWEEEHDKWIDMNLTEDVDLDHQNELVSETADAPSDLIMPLLRYQKEWLAWALKQEESTTRGGILADEMGMGKTIQAIALVLSKREISQKICEPKVVLRAPGSSMDLPKIKGTLVICPVVAVLQWVNEIGRFTVKGSTKVLVYHGANRGKSIGQFSEYDFVITTYSIVEAEYRKNVMPPKQKCVFCRKLFYPHKMSIHLRYFCGPDAIKTDKQSKQKKKEPKLELKISDSVEDNGGECEGEKRKKDQPKPRKNYKPKKHMGFGPSIENSAVDEQSTSTRKSILHSVKWDRIILDEAHFIKDRRSNTAKAVLALESEYKWALSGTPLQNRVGELYSLIRFLRIIPYSYYLCKDCDCRTLDYSSSTECPNCEHKSVRHFCWWNKYVATPIQAMGNIGEGQRAMILLKHKILKSILLRRTKKGRAADLALPPRIVSLRRDTLDIKEEDYYQSLYNESQAQFNTYVEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSRTSTLRAGNIVDTENGEQVCGICNDPLEDPVVTSCAHVFCKACLNDFSTTLGQVSCPSCSKPLTVDLTTSMDPGDRDMKTTIKGFKPSSILNRIRLDDFQTSTKIDALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLQKSGITCVQLVGSMSMAARDAAISRFTNEPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIEKTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLKFLFIT* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0459 936 SMART ultradead3 205 529 IPR014001 -
Vvi12g0459 936 Pfam SNF2-related domain 223 659 IPR000330 GO:0005524|GO:0140658
Vvi12g0459 936 MobiDBLite consensus disorder prediction 399 415 - -
Vvi12g0459 936 SMART helicmild6 797 880 IPR001650 -
Vvi12g0459 936 MobiDBLite consensus disorder prediction 67 87 - -
Vvi12g0459 936 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 762 926 IPR001650 -
Vvi12g0459 936 Pfam RING-type zinc-finger 682 719 IPR027370 -
Vvi12g0459 936 ProSiteProfiles Zinc finger RING-type profile. 682 722 IPR001841 -
Vvi12g0459 936 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 511 IPR014001 -
Vvi12g0459 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 934 IPR027417 -
Vvi12g0459 936 CDD DEXDc_SHPRH-like 209 584 - -
Vvi12g0459 936 SMART ring_2 682 721 IPR001841 -
Vvi12g0459 936 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 676 748 IPR013083 -
Vvi12g0459 936 ProSitePatterns Zinc finger RING-type signature. 697 706 IPR017907 -
Vvi12g0459 936 MobiDBLite consensus disorder prediction 88 102 - -
Vvi12g0459 936 SUPERFAMILY RING/U-box 673 726 - -
Vvi12g0459 936 CDD SF2_C_SNF 764 891 - -
Vvi12g0459 936 MobiDBLite consensus disorder prediction 67 123 - -
Vvi12g0459 936 MobiDBLite consensus disorder prediction 399 442 - -
Vvi12g0459 936 Pfam Helicase conserved C-terminal domain 768 880 IPR001650 -
Vvi12g0459 936 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 79 934 - -
Vvi12g0459 936 Gene3D - 406 600 IPR038718 -
Vvi12g0459 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 584 IPR027417 -
Vvi12g0459 936 Gene3D - 601 934 IPR027417 -
Vvi12g0459 936 MobiDBLite consensus disorder prediction 103 121 - -
Vvi12g0459 936 Gene3D - 211 354 IPR038718 -
Vvi12g0459 936 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0459 Vvi-Chr12 5592579 5609211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0459 150 936 RAD5 or RAD16-like Gene Family AT1G05120 68.061 0.0 1103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi12g0459 SNF2_N 4.5e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0459 K15083 - vvi:100267049 1810.42