Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0449 ATGATAAGCAACAGCGGTGGTGGTGGTGCGTTGAGCGATGATGCGACGTCTGGGATGGGCGGCAATGGAGGGGCTAATCAGGGGCTGAAGAAGGGACCGTGGACGACGGCAGAGGACGCGGTGCTGGTGGAGTATGTGAAGAGACATGGAGAGGGGAACTGGAACTCTGTGCAGAAGAATTCAGGGCTGTCCAGGTGTGGGAAGAGTTGTAGGCTGAGATGGGCTAACCACTTGAGGCCTAATCTCAAGAAGGGTGCATTCTCTCCTGAAGAAGAGAGACTCATTGTTGAACTCCATGCTAAGCTTGGTAACAAATGGGCTCGCATGGCTGCTCAGTTACCAGGTCGAACAGACAACGAAATCAAGAACTACTGGAACACAAGGGTGAAGAGACGGCAGCGAGCTGGTCTGCCTTTGTATCCGCAAGGAGTTCAGAAGGAAGCACTTCACCAGCAGCAGCAGCAGCCCGTACTGTCCCATTCTTCATCTTCTATGTTTTCACCATTCCTGTCATCACCTCAGCAGACAAAGCCCAGTTTCAATCCTACTCTCTCGCTTTTCGATCAGGTCAATTTCACAACTTCTGCAAATCCTATAAGCAGCCACGCCAATTCATCTTTTCTCAGCAACCCCTCTTCCCAGTTTAAGTTTTTCCCCAACAACAATGCCGGTTATACTATGCCGTTGTCCCCTGTTTCACCATTCCAATCCTCGATGTCTTCTCTCTACAACCATAGCCTCACTCCATCCCAACTTCTCTCCCAGTCTCCAGTTCAGTTCAATTCTGGCAGCTTTGACGGCAGTTTCAATCTAAATCAGCCAATTGTGGGATCCCAATTTCACCCAATTGTTGCAGTTCCGGGGATGAATCTGAAACTTCCTGCATCCCCATCTCCACTACAACAAACCACCTCTGCTTCCTCAGGCGCAACCGGGGACGATTACATGATATCACAGTCAACCACTGCTAATACTTATGTGGTTGCTCAGCCACTGTCACAGGACACTAGTGGTTTGCTGGATGATATGTTGAAGGAGGCTGAAACTTTGTCCCGAAATGAGAATTCCAAGGAGGAAAACTGTGTAGTGCAGTTTGGGAATGCGCAAGCTGAGGACAACTCCATGGCTGCATCAAACAAGGGAAAACATGTCCTTGATGGGATTGTGCAGAACGGAGCTGGTCAGCATATGTGGTCTGCTTACGGGAACCGCCAGGCCACTCCTGAGAACCAGTGGGCTGATTCCTGCGCTGCTCAGGCACATGCTGGTGAGTTCATGTAA 1281 0.5012 MISNSGGGGALSDDATSGMGGNGGANQGLKKGPWTTAEDAVLVEYVKRHGEGNWNSVQKNSGLSRCGKSCRLRWANHLRPNLKKGAFSPEEERLIVELHAKLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRQRAGLPLYPQGVQKEALHQQQQQPVLSHSSSSMFSPFLSSPQQTKPSFNPTLSLFDQVNFTTSANPISSHANSSFLSNPSSQFKFFPNNNAGYTMPLSPVSPFQSSMSSLYNHSLTPSQLLSQSPVQFNSGSFDGSFNLNQPIVGSQFHPIVAVPGMNLKLPASPSPLQQTTSASSGATGDDYMISQSTTANTYVVAQPLSQDTSGLLDDMLKEAETLSRNENSKEENCVVQFGNAQAEDNSMAASNKGKHVLDGIVQNGAGQHMWSAYGNRQATPENQWADSCAAQAHAGEFM* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0449 426 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Vvi12g0449 426 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Vvi12g0449 426 MobiDBLite consensus disorder prediction 146 177 - -
Vvi12g0449 426 MobiDBLite consensus disorder prediction 1 32 - -
Vvi12g0449 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Vvi12g0449 426 FunFam MYB-related transcription factor 30 83 - -
Vvi12g0449 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Vvi12g0449 426 SMART sant 30 80 IPR001005 -
Vvi12g0449 426 SMART sant 83 131 IPR001005 -
Vvi12g0449 426 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 18 376 - -
Vvi12g0449 426 Gene3D - 30 83 - -
Vvi12g0449 426 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Vvi12g0449 426 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Vvi12g0449 426 Gene3D - 86 161 - -
Vvi12g0449 426 FunFam Transcription factor MYB97 86 161 - -
Vvi12g0449 426 Coils Coil 340 360 - -
Vvi12g0449 426 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 46 55 IPR001345 GO:0003824
Vvi12g0449 426 CDD SANT 33 78 IPR001005 -
Vvi12g0449 426 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Vvi12g0449 426 MobiDBLite consensus disorder prediction 145 177 - -
Vvi12g0449 426 CDD SANT 86 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0449 Vvi-Chr12 5528282 5529743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0449 27 149 MYB Transcription Factor Family AT2G32460 80.488 3.83e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi12g0449 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0449 K09422 - vvi:100253438 820.076