Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0434 ATGTCCACGCCTCGCCCATCCTGGACCATCGACCCGGATCTCGACACCATCGACCTTGAACCCGAAGACTTTGCCGCCTCTCTTCCCATCAAGAAAGTCCCAGCGGGCGACGTCTTCGAGGCCTCCCGTGCCGGCGACGTCGATAGGCTCCGGTACCTGCTGGAGTCGGGGGTGAATGTGAACGCGCGGGACCAATGGGACTCGGTGGCGCTCTACTACGCCTGCCTCGCCGGCCATCTCGATGCTGCGCGAATGCTACTCGAGAGCGGCGCGATATGCTCGGAGCATACCTTTGATGGCGATCGCTGCCACTACGCAGCGCTAAATTTGAAGGTTCGAAAGCTGTTGAAGGCCTTCGAGGCGCGGCCTCCGCCTTTGGGGCCGTTACAGGGGGCGCTGAGAGAGACTTTCTTAGGGTGCGCCGCAAATCGGATTTACAGTGAAGAATTGGAGGGGCAATTTCAAAATTCAGGCCTTTCATCCAATGGGGGACTCAATAGGGATCACTTTCCTCCAGATGTGGCATTTTATGTCCAAGGAAGACCTATTGAAGCTCACAGGATCATCCTAAGTGCTCGGTCACCATTCTTTAAAAGAAAATTTGAGAGTGATTGGAAAGATCGAACAGAAGTAAGATTCTCAAGGGAAAAATTGTCTTATCCTGCTCTATACAGCCTTATCCACTTCTTTTATTCTGATAGATTAGATATTGCAGTAGATGACATGGAAGATCTTGTGAGAATCTGCAAGGTTTGCAAATGTGACGCATTACAAAGGGTCCTAGAGAAAGAATTAATTCACCAAAAATATGCAGAGTACAAAGCACTGAGAGATGTAGACAACTCTCAGAAACGATTTATCTTACAGGGTCTTTCCCTTCCTGAGGAAGACCGGCTTCCTGCTGCCTTGCATCGTATCCTTCAAATATCCCTTGCCAAGTCCAACCAGGAACATAACCTAGAGAATGGTGTTAGTAAATTAGTATCTTGTGTTGGTGCAATGAAAATGGGTGGTTCTGATGATCTTGCAGATGTTTGTATAAAAGTTGACAAAAAGGTCTTTCGTTGCCACCAAGTGGTTTTAGCAGCAAGATCAGAGTACTTTAAAGCAAGGCTATCCCGTATGAAGGATTTTCTTGAAGGAATAAATGGGTTGCCAAATTATACTCTTCCATGTCTTGAAGAACATGACTTGAGCATGGAGGCATTTGAGAAAATGATTGAGTATATGTATACTGATGGTTTGAAGGATATGGACCCTGATCAGGCAGAAGAATTGTTTGATGCTGCTTCAAGGTATTTGTTGTTTCCTCTTAAGCGTGCTGTTGCTGATGCGCTGATGCCACATCTGGAAACGGTTCCACCAGCAGAGTTATGCCATTGGCTCATATTATCAGACATGTATGGGGTTCTGAAGATAAGGGAATATTGCCTGGATGTGATAGCATGTAACTTTGAGACATTTGCTGATACTCCAGAGTTCAGAGCAATGCTCTTGACCCTTCCACCTCCATCAGGAGATTCCTCGCTACGTACCACTGTTCCAAGTGCTCCAGGAGCTGGGATGAATACAGACCAAGGAAATCTTCTTGATGATTTGCGAGAGAAATGGCTTGAGGCTGAAGCTGCTGAGCTTGATAAGAGAGATGAAAGTGCATTGCAATTTGATAAGCGCCTAGAGATGCTTGTGGTTGTAGCAGAACAAGAAAATTCTGCTACTCACTGA 1725 0.4661 MSTPRPSWTIDPDLDTIDLEPEDFAASLPIKKVPAGDVFEASRAGDVDRLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQGALRETFLGCAANRIYSEELEGQFQNSGLSSNGGLNRDHFPPDVAFYVQGRPIEAHRIILSARSPFFKRKFESDWKDRTEVRFSREKLSYPALYSLIHFFYSDRLDIAVDDMEDLVRICKVCKCDALQRVLEKELIHQKYAEYKALRDVDNSQKRFILQGLSLPEEDRLPAALHRILQISLAKSNQEHNLENGVSKLVSCVGAMKMGGSDDLADVCIKVDKKVFRCHQVVLAARSEYFKARLSRMKDFLEGINGLPNYTLPCLEEHDLSMEAFEKMIEYMYTDGLKDMDPDQAEELFDAASRYLLFPLKRAVADALMPHLETVPPAELCHWLILSDMYGVLKIREYCLDVIACNFETFADTPEFRAMLLTLPPPSGDSSLRTTVPSAPGAGMNTDQGNLLDDLREKWLEAEAAELDKRDESALQFDKRLEMLVVVAEQENSATH* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0434 574 Gene3D Potassium Channel Kv1.1; Chain A 334 491 IPR011333 -
Vvi12g0434 574 Gene3D Potassium Channel Kv1.1; Chain A 153 287 IPR011333 -
Vvi12g0434 574 SUPERFAMILY POZ domain 157 267 IPR011333 -
Vvi12g0434 574 CDD BTB_POZ_ZBTB_KLHL-like 342 433 - -
Vvi12g0434 574 ProSiteProfiles BTB domain profile. 343 419 IPR000210 GO:0005515
Vvi12g0434 574 Pfam BTB/POZ domain 340 446 IPR000210 GO:0005515
Vvi12g0434 574 Pfam BTB/POZ domain 170 268 IPR000210 GO:0005515
Vvi12g0434 574 ProSiteProfiles Ankyrin repeat profile. 41 65 IPR002110 GO:0005515
Vvi12g0434 574 SUPERFAMILY Ankyrin repeat 40 117 IPR036770 -
Vvi12g0434 574 SUPERFAMILY POZ domain 339 449 IPR011333 -
Vvi12g0434 574 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 10 563 IPR044515 -
Vvi12g0434 574 Gene3D - 38 151 IPR036770 -
Vvi12g0434 574 ProSiteProfiles BTB domain profile. 172 239 IPR000210 GO:0005515
Vvi12g0434 574 SMART BTB_4 172 269 IPR000210 GO:0005515
Vvi12g0434 574 SMART BTB_4 343 450 IPR000210 GO:0005515
Vvi12g0434 574 FunFam BTB/POZ domain-containing protein 32 155 - -
Vvi12g0434 574 FunFam BTB/POZ domain-containing protein 166 288 - -
Vvi12g0434 574 Pfam Ankyrin repeats (many copies) 40 87 IPR002110 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi12g0434 BTB 4.5e-16 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0434 K10520 - vvi:100260193 1158.28