LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0408	ATGGATGCAGCTAAGGACGGTGGAAAATCCAAGAAGAGTGTGGGGGAAACTAGGGATATGGTAGGTAGGGAGAGAAGCAAGGCCGGTGATTTTGATTTGAGCTTAGAGAGGCGACAATGGAAGCCAGTTTTTGGTGAAGCTTCCATGTCAAATAGGCCTCTGAAGAAGATTCGAAGCCCAGAAAGAAGAGACTCATCTCTGTCTTCTTCTTCTTCTTCTTTAGCTTACCAACCTCCTTCTCCTTCACTGCCTTCTACAGTTTCAGCTAGTTCTGCTGCATGTCTCAATCTTCCTCCATCTTCAAGAATTGTCTTCCCTTTTGCTTTTGATGGTTCACAACAAATGGAGATCCCTCAACAATTCAGAACAGCCCCTTTGGCTATGTTCCCGCCACCACCGATGCAGCGGACATCACAAAATCAGCAACAAATGATCTCTTTTGCTCCTCAACACCACCACAGCATGGCAAGTTATCCAGCCTTTCTTGCTGGAGACTCGGGTTTGCAGCAGCAGCAGCAGCAGCAGCTTCTGCAGTATTGGAGTGATGCACTAAATCTTAGTCCTAGAGGGAGGATGATGATGATGAACAGGTTGAATCAAGATGGACGGAACTTTTTTAGGCCTCAGGCACCGCCAATATCAACAACAAAGCTTTACAGAGGAGTAAGGCAACGACACTGGGGGAAATGGGTGGCTGAAATTCGCCTCCCTCGCAACAGGACTCGCCTTTGGCTTGGTACTTTTGACACCGCCGAGGATGCTGCATTAGCATATGATCGCGAGGCCTTCAAGTTGAGAGGTGAGAATGCACGGCTTAATTTCCCTGAGCTTTTCCTCAATAAAGACAAAGCAGGGTCCACTGCTCCCAGTTCATCATCCTCTTCTCCTCCAACTCCCCATGAAAATTCGCTTTGGGGCAGGTCTCAGAACCAGCCTCAACAAGCTCCAGAAGGTTTAAATTTGCAGGATTCTGAGGTGGGGATGCTTCCACCACCGGCTCCATCTCCAGGATATGATTCCAATAATGAATTGGGATTGGTATTGGGTTCCAGCGAGGCTGCAGCAAGAAATGATGAAGTTCAGAAGAGCTCGAATGCAGGGGAGAGTGTATCAGAGTCACCACCAGAGTCGGTTTGGGGGGAAATGGCAGAGGCTTGGTTCAACGCAATTCCAGCTGGTTGGGGTCCAGGCAGTGCTGTTTGGGATGATTTGGACACCTCCAATAATCTTCTTCTGCAATCAAATGTTCATTTTGGCAATGCCCATCAGCAGCAGCAGCAGCAGGCATTCAATGATCCTGATTATGGGAGGCAGCAAGATAACTTGGACTCTGCTTCATCATCTTCTTCTTCTTGTCCCATGAGACCCTTCTTTTGGAGGGATCAAGATCAAGATTGA	1398	0.48	MDAAKDGGKSKKSVGETRDMVGRERSKAGDFDLSLERRQWKPVFGEASMSNRPLKKIRSPERRDSSLSSSSSSLAYQPPSPSLPSTVSASSAACLNLPPSSRIVFPFAFDGSQQMEIPQQFRTAPLAMFPPPPMQRTSQNQQQMISFAPQHHHSMASYPAFLAGDSGLQQQQQQQLLQYWSDALNLSPRGRMMMMNRLNQDGRNFFRPQAPPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKAGSTAPSSSSSSPPTPHENSLWGRSQNQPQQAPEGLNLQDSEVGMLPPPAPSPGYDSNNELGLVLGSSEAAARNDEVQKSSNAGESVSESPPESVWGEMAEAWFNAIPAGWGPGSAVWDDLDTSNNLLLQSNVHFGNAHQQQQQQAFNDPDYGRQQDNLDSASSSSSSCPMRPFFWRDQDQD*	466

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0408	465	Gene3D	AP2/ERF domain	218	276	IPR036955	GO:0003700\|GO:0006355
	Vvi12g0408	465	PRINTS	Ethylene responsive element binding protein signature	219	230	IPR001471	GO:0003700\|GO:0006355
	Vvi12g0408	465	PRINTS	Ethylene responsive element binding protein signature	241	257	IPR001471	GO:0003700\|GO:0006355
	Vvi12g0408	465	MobiDBLite	consensus disorder prediction	282	377	-	-
	Vvi12g0408	465	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	19	404	-	-
	Vvi12g0408	465	MobiDBLite	consensus disorder prediction	1	39	-	-
	Vvi12g0408	465	MobiDBLite	consensus disorder prediction	356	372	-	-
	Vvi12g0408	465	MobiDBLite	consensus disorder prediction	1	88	-	-
	Vvi12g0408	465	Pfam	AP2 domain	219	267	IPR001471	GO:0003700\|GO:0006355
	Vvi12g0408	465	ProSiteProfiles	AP2/ERF domain profile.	218	275	IPR001471	GO:0003700\|GO:0006355
	Vvi12g0408	465	SUPERFAMILY	DNA-binding domain	218	276	IPR016177	GO:0003677
	Vvi12g0408	465	MobiDBLite	consensus disorder prediction	64	88	-	-
	Vvi12g0408	465	MobiDBLite	consensus disorder prediction	420	465	-	-
	Vvi12g0408	465	MobiDBLite	consensus disorder prediction	284	320	-	-
	Vvi12g0408	465	SMART	rav1_2	218	281	IPR001471	GO:0003700\|GO:0006355
	Vvi12g0408	465	CDD	AP2	217	277	IPR001471	GO:0003700\|GO:0006355
	Vvi12g0408	465	FunFam	Ethylene-responsive transcription factor 2	217	276	-	-
	Vvi12g0408	465	MobiDBLite	consensus disorder prediction	420	455	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g0408	Vvi-Chr12	5139563	5140960	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0408	45	405	AP2-EREBP Transcription Factor Family	AT4G28140	39.178	5.80e-59	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vvi12g0408		AP2	3.5e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0408	-		-	vvi:100246593	887.486