Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0399 ATGAGGGTGCTGGGTATTGGGTTTTTTTGGGTTGTCGTCGAGGGGCTGTTGCTTGTCTCCGGCCAGCTCCAACACAGCCTGTCCAACGCACATTGGCACTCAGCCACCGCCACCTGGTACGGCAGCCCCGACGGAGACGGCAGCGACGGTGGAGCATGTGGGTATGGGTCGCTAGTAGATGTGAAGCCGTTTAGGGCAAGAGTAGGGGCAGTGAGTCCGGTGCTGTTCAAGGGAGGGGTGGGTTGTGGGGCATGCTACAAGGTGAAGTGCCTTGACCACAACATATGTTCAAGGAGAGCCGTTACAATCATAGTAACGGACGAATGTCCAGGTGGGTACTGCTCAGGAGGGCGCACCCACTTCGACCTCAGTGGTGCAGCCTTCGGTCGCATGGCTGTGGCCGGAAACAATAACCAGCTCAGGGACCGAGGCGAGATCTCCGTCATTTTCCGCCGGACTCCATGCAAATACCCAGGGAAGAACATAGCCTTTCATGTGAACGAGGGATCAACTGATTACTGGCTGTCACTTCTAGTGGAGTTTGAAGATGGAGATGGTGATGTTGGGTCCATGCATATAAGAGAAGCAAGTTCAACAGAGTGGCTAGAGATGAGGCATGTGTGGGGAGCAAGTTGGTGTATAACTGGGGGGCCCTTGAAGGGACCATTTTCAGTGAAGTTAACTACACTATCAACAGGAAGAACTCTGTCTGCAAGGGAAGTCATTCCAAGGAATTGGGCTCCTAAGGCCACTTACACCTCTCGGCTCAACTTCTTCTAG 780 0.5372 MRVLGIGFFWVVVEGLLLVSGQLQHSLSNAHWHSATATWYGSPDGDGSDGGACGYGSLVDVKPFRARVGAVSPVLFKGGVGCGACYKVKCLDHNICSRRAVTIIVTDECPGGYCSGGRTHFDLSGAAFGRMAVAGNNNQLRDRGEISVIFRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREASSTEWLEMRHVWGASWCITGGPLKGPFSVKLTTLSTGRTLSAREVIPRNWAPKATYTSRLNFF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0399 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Vvi12g0399 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Vvi12g0399 259 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Vvi12g0399 259 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Vvi12g0399 259 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vvi12g0399 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Vvi12g0399 259 Gene3D - 18 155 IPR036908 -
Vvi12g0399 259 SMART dpbb_1 68 150 IPR007112 -
Vvi12g0399 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Vvi12g0399 259 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Vvi12g0399 259 PRINTS Major pollen allergen Lol pI signature 132 147 IPR005795 GO:0005576|GO:0019953
Vvi12g0399 259 PRINTS Major pollen allergen Lol pI signature 110 125 IPR005795 GO:0005576|GO:0019953
Vvi12g0399 259 PRINTS Major pollen allergen Lol pI signature 230 247 IPR005795 GO:0005576|GO:0019953
Vvi12g0399 259 FunFam Beta-expansin 3 157 259 - -
Vvi12g0399 259 CDD DPBB_EXPB_N 32 155 - -
Vvi12g0399 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 160 IPR007112 -
Vvi12g0399 259 Pfam Lytic transglycolase 70 134 IPR009009 -
Vvi12g0399 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 254 IPR007117 -
Vvi12g0399 259 SUPERFAMILY Barwin-like endoglucanases 24 159 IPR036908 -
Vvi12g0399 259 SUPERFAMILY PHL pollen allergen 160 254 IPR036749 -
Vvi12g0399 259 PANTHER EXPANSIN-B3 19 258 - -
Vvi12g0399 259 Gene3D - 156 255 IPR036749 -
Vvi12g0399 259 Pfam Expansin C-terminal domain 162 243 IPR007117 -
Vvi12g0399 259 FunFam Expansin B3 19 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0399 Vvi-Chr12 5089208 5091217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0399 12 214 Expansin Gene Family AT4G28250 65.049 1.85e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0399 K20628 - vvi:100260198 537.724