Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0371 ATGGGTTATGGTTCAGGTAGTGCCTCCCAGGAAGACCGGGATGACGATGATGAGGATGAGTATGATGAAGGGGGCGCAAGTAACCGGCTTTTGGGATTTATGTTTGGAAATGTCGATGGTGCTGGTGACCTTGATGTTGATTACCTTGATGAGGATGCGAAGGAGCATCTTGCTGCACTGGCGGACAAGCTTGGACCATCCCTAACAGATATAGATCTGTCAGTAAAATCACCTCAAACACCTGCTGATGGTGCTGAACAAGATTATGATGAAAAAGCTGAGGATGCAGTTAATTATGAAGACATTGATGAGCAGTATGAAGGACCAGAAATTCAAGCTGCCACTGAGGAGGATTATTTGTTATCAAAAAAGGAATATTTTTCTGCTGATGTTTCAGTGGCTTCTTTGGACCATTCAGCTTCTGTTTTTGATGATGATAATTATGATGAGGATGAGGAATTTGAGAAGGAACATGAGGTGGTGGACAACAATTCTGAAGTTCAAGCTATTTCATCAGGTGAGCAGGGTGAGCATCTTTCTGTAGTATCTGAAGGAGAAAAATCACCTGATGATGATCTATTTCCAGGTCTATTGGAACCTGAAAATTTGACTGGAGATTTAGAAGATATACCAGAGGAGGAACCTGAAGGTCTTGAGGAGCCATTTGAGGGTAAAAGGTCAGCACCATTGCCTATTTTGTGTGTAGAAGACGGAATGGTGATATTGCGGTTTTCTGAAATTTTTGGTATTCATGGGCCCTTGAAAAAAGGGGAAAAGAGGGACCGTCGATATACGATTCCTAAGGAGAGATATAAATCTATGGATGCTCCTGATAATGTTGAAGAGGATGAGGAGGCATTTTTAAAGGGAGGTTGCCAAGCTTTTTCATTTACCAAACACAAACTTTTGACTCAAGATGATGCATCAGTGTTTATGGAGGATGAGGCAGAACTGAAAAAAGTTGGTGTTGTACAAGGCACTGCCACAATGGAACTGCAAAATGATGAGCAAAGGAAGCATTCTTGCATCAGTGCAGAACCAATGAAAGAGGATATGCCTGTTGATCTGTCAGAATTCTGGCTATCCCCATTATCTCCTAAATTCTATCCACTTGATCAGCAAGACTGGGAAGATAAAATAATCTGGGACAATTCTCCTGAAGTCAGTGACAATTCTGCAGAGAGTTGTGAAATCTCTGGACCTGATTCTGAAGTTGTAGTTGATAAAGAAACAGAACTGGTAACCAAGGCTCAAAATCAGAGGCCAAAGTTCCAAGTGGCAGTAGATGAGAAGGATCATGGTGTTTTTCTGGGTAGTTCTCCTGTTTTGATAGAGGCCTTTGGCTCAAGAAATTCTTCTGCACTGATTAATCATTCCCTTTCAGAAATTAAATATCATCCCCAACTTTTGAGGTTAGAAACTCGGTTAGAAATGGATAATTCAAGTCAGTCAGCTGTTAGAAAGGAGGATGCTATTGAAGATCCTCGCGGAAGTGAGGCTATAAGGCGTTTTAACAAACTTACATTGCAAAATAGAGACATGTTGGAAGGATCTTGGGTAGACAGAATAATTTGGGAACCCCATAAACCTATATCAAAACCCAAACTAATTTTGGATCTTCAAGATGAGCAAATGCTTTTTGAAATTCTAGATGACAAGGATGGTAAAAATCTTGGGCTTCATGCAGGAGCTATGCTTATTACTCGTCCTGTAAAATCCAGCACTGGGGATTCTATCGAGTTACCTGTTCATGGAGGTCCTTCCGGTGGGCGATTCAATATTGCTAATGATAAGTTCTATTTGAACAGGAAAACTTCCCAGCAACTGAAATCACATTCTAAAAAACGCACTGCTCATGGTGTCAAAATTCTGCATTCAATACCTGCCCTTAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCTAATTTTCATCGACCAAAAGCCTTATGGTATCCCCATGATATTGAAATGGCAGTCAAAGAACAAGGGAAACTGCCTACACAAGGACCCATGAAAATCATATTGAAAAGCTTGGGAGGCAAAGGAAGTAAACTTCATGTAGATGCTGAGGAGACTGTCTCTTCTGTCAAATTAAAAGCTTCAAAAAAGCTAGATTTTAAACCATCAGAAATGGTCAAGATATTTTATACTGGAAAGGAGCTTGAAGACCATAAGTCTCTTGCTGCTCAAAATGTTCAACCAAACTCCTTGCTTCATCTTGTCCGTACAAAAATACATTTGTGGCCGAGGGCACAAAAGCTTCCTGGTGAGAATAAGTCTTTGCGTCCTCCTGGGGCATTTAAGAAGAAATCTGACCTTTCTGTGAAAGATGGCCATGTTTTCTTGATGGAGTATTGTGAGGAAAGGCCATTACTGTTGGGAAATGTTGGGATGGGTGCAAGGTTGTGCACTTACTATCAAAAATCAGCCCCTGGTGATCATACTGGTGCCTTTATGCGCAATGGAAACAGCAGTTTGGGGACTGTTCTCACACTCGATCCTGCTGATAAATCACCTTTTCTAGGAGATATAAAACCTGGTTGCAGTCAGTCATCTCTCGAAACCAACATGTACAGAGCACCCTTATTTCCCCATAAAGTATCATCAACTGACTACTTGTTAGTACGTTCTGCAAAAGGAAAGCTTTCCATAAGGCGCATTGACAGGATTGATGTTGTTGGACAACAGGAGCCTCACATGGAAGTGATGTCTCCTGGAACAAAGGGACTTCAGACATATATCATGAACAGGTTGTTGGTGTATATGTATCGTGAATTTCGTGCTGGTGAAAAGCGCGGCTCACTTCCTTGCATCCGTGCAGATGAATTGTCTGCTCAGTTTCCTAACATTTCAGAACCTTTTCTTCGGAAAAGGCTGAAGCATTGTGCTGATTTGCAGAAGGGATCTAATGGACTGCTATTTTGGGTTATGAGGCGTAATTTCCGGATCCCGCTGGAGGAAGAGTTGAGAAGGATGGTGACACCAGAAAATGTGTGTGCCTATGAAAGCATGCAAGCTGGCCTTTACCGCCTCAAACATTTAGGAATTACACGGCTGACACTTCCTACTGGGCTTTCATCTGCAATGAATCAGCTCCCTTATGAGGCAATTGCTTTAGCTGCTGCATCCCACATTGAAAGGGAACTGCAGATAACTCCATGGAACCTAAGTAGCAACTTTGTTGCATGTACAAATCAGGATAGAGAAAATATTGAACGTTTGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCCTAGGTTTCAGCTATGTCCGAACTGCTCCCAAAGCTCCAATATCTAATGCAATGGTTAAGAAAAAAATAACTGTTGGCCGAGGAGGTTCAACTGTCACTGGAACAGATGCTGATTTGCGTAGATTGAGCATGGAGGCTGCTCGAGAGGTTCTCCTCAAGTTTAATGTTCCGGAGGAGCTAATTGCAAAGCAGACTAGGTGGCATCGTATTGCTATGATCCGTAAGCTTTCAAGTGAGCAAGCTGCATCAGGGGTAAAGGTTGATCCAACAACTATCAGTAAGTATGCACGTGGGCAGCGCATGTCCTTTCTTCAGCTTCAGCAGCAGACCAGAGAAAAATGTCAGGAGATTTGGGATCGACAAGTTCAGAGTCTTTCAGCTGTTGACAGTGATGAAATTGAGAGTGACTCTGAAGCAAATAGTGACCTGGATTCCTTTGCTGGAGACCTAGAAAATCTACTGGATGCAGAAGAATGTGAGGATGGGGAAGAGGGTAACTGTGAATCAAAGCATGATAGAACAGATGGTGTTAGGGGGCTCAAAATGAGAAGGCGCCCATCCCAAGCACAGGCAGAAGAGGAAATTGAAGATGAAGCTGCTGAAGCAGCGGAGTTGTGTAGGATGCTCATGGATGATGATGAAGCTGAGAGGAAAAAGAAGAAAAAAACAAGACCTGTCGGGGAGGAAGAAGGATTGGCTTTGGGGTCACAATTAAATTTTGGTTTTGAAAATGGACAAAAAATGAAGAAAAATAGTGCTGTAGTAAAGCAGCTTGTTAGTAAAGTGCAGCCTGATGGATCATACTCTCAAAAAGAGAAAGCCTTTCGAGACTCAAAGGAGGTGGAAAGTTTTCTTCCTAAAAGAAACATTTCTGGGAAGGCAAAAATTTTGAAGAAGAATGACGCCGCACGCATGGGAGTACTCCATAAGAAGATAAAAATAATGGGTGATGGAATTAAAATGTTCAAGGAAAAAAAATCAGCAAGAGAAAGTTTTGTCTGCGGAGCTTGTGGTCAGCTTGGGCACATGAGGACTAACAAGAATTGCCCCAAGTATGGAGAAGATTTAGAAGCACAAGTTGAGATTACAGAACCAGAAAAGGCATCAGTGAAGTCCAGTTCTTTGGAACACTCTGCTCAGCTCCAGCAGAGGACTCTCATAAAGAAAATCATACCAAAAAGTGCAACAAAAATGGCTCTGGTAGAAACTTCTGAGGGCGAGAAGTCTAGTTTGAAGGCAAAAAATCTTCCTGTGAAGTTTAAATGTGGCTCTGCTGATAGGCTTCCTGATAAAGTCGCTCCAGGGACCACACATGGTCCTGACCAACCTGTCATTTCTGATGCTGAAACTGGGAATAAGTTTGTTAAGGTTAATAAAATAATAATTTCCAACAAGATGAAACCCGAAGATTCACAGGTTGAATCTCATAAACCCTCTATTGTGATCCGGCCGCCTACTGAAACAGATAAGGAACATGTTGAATCTCATAAGCCTTCTATTGTAATACGCCCACCATCGGAAATAGACAGAGACCAGGTTGAATCTCATAAGCCCTCTAATGTGACACGGCCTCCTACGGAAACAGATAGGGACCAGGTTGAATCTCATAAACCCTCTATTGTAATACGGCCACCAGTGGATACAGATAGAGACCAGCCTCGTAAGAAGATCATAATCAAACGGCCAAAAGAGATTAGTCTAGACCAAGTCAGTCAGGATGGAAGCACTGGTCTTGAGTACAGAAAAACTAAGAAAATAGTTGAATTATCAAGTTTTGAGAAGCATAAGAAGCCAGAGACCAAGCATTTGAATGAGGATGCCGCAAAAAGGAAAGCTAGAGAGGATAAAAGATTGTGGGAAGAGGAAGAGAAGAGGAGAAATGCAGAGAGATTGAGAGAAGAGAGGGCAAAGAGGCTTTATGAGGAAGAAATGAGGATGCTAGAAGAGCAAGAAAGGTTAGCTGAGATTAGAAAGTTTGAGGAAGCCATAAGAAGAGAGAGAGAGGAAGAAGAACGTCAGAAAGCACGGAAAAAGAAAAAGAAAAAAATGCCTGAAATGAGAGACAATCATTTAGAGGACTACAGAACTAGAAGAAATGATAGAAGGATTCCAGAAAGGGACAGGAGTACCAAAAGGAGACCTGTCGTTGAGTTGGGAAAGTTTGGTGCAGACTATGGCCCACCAACAAAGCGCCGTAGAGGAGGAGAGGTTGGTTTGTCAAATGTCTTAGAAAGCATTGTGGATTCCCTGAGAGACAGATATGAGGTGTCTTATCTCTTCTTAAAACCAGTGTCCAAGAAAGAAGCTCCCGATTACCTGGACATCATAAGGGACCCGATGGACCTGTCCACGATCAGGGAGAAGGTGAGGAAGATGGAGTACAAGAACCGAGAGGATTTCAGGCATGATGTGTGGCAAATCACCTACAATGCCCACAAATATAACGATGGACGTAACCCTGGTATTCCTCCCCTTGCGGATCAGCTTTTGGAGCTTTGTGACTATTTGTTAAGCGAGAATGATGCCAGCTTGACTGAAGCTGAAGCTGGTATCGAATACAGGGATACTTAG 5841 0.4232 MGYGSGSASQEDRDDDDEDEYDEGGASNRLLGFMFGNVDGAGDLDVDYLDEDAKEHLAALADKLGPSLTDIDLSVKSPQTPADGAEQDYDEKAEDAVNYEDIDEQYEGPEIQAATEEDYLLSKKEYFSADVSVASLDHSASVFDDDNYDEDEEFEKEHEVVDNNSEVQAISSGEQGEHLSVVSEGEKSPDDDLFPGLLEPENLTGDLEDIPEEEPEGLEEPFEGKRSAPLPILCVEDGMVILRFSEIFGIHGPLKKGEKRDRRYTIPKERYKSMDAPDNVEEDEEAFLKGGCQAFSFTKHKLLTQDDASVFMEDEAELKKVGVVQGTATMELQNDEQRKHSCISAEPMKEDMPVDLSEFWLSPLSPKFYPLDQQDWEDKIIWDNSPEVSDNSAESCEISGPDSEVVVDKETELVTKAQNQRPKFQVAVDEKDHGVFLGSSPVLIEAFGSRNSSALINHSLSEIKYHPQLLRLETRLEMDNSSQSAVRKEDAIEDPRGSEAIRRFNKLTLQNRDMLEGSWVDRIIWEPHKPISKPKLILDLQDEQMLFEILDDKDGKNLGLHAGAMLITRPVKSSTGDSIELPVHGGPSGGRFNIANDKFYLNRKTSQQLKSHSKKRTAHGVKILHSIPALKLQTMKLKLSNKDIANFHRPKALWYPHDIEMAVKEQGKLPTQGPMKIILKSLGGKGSKLHVDAEETVSSVKLKASKKLDFKPSEMVKIFYTGKELEDHKSLAAQNVQPNSLLHLVRTKIHLWPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLGNVGMGARLCTYYQKSAPGDHTGAFMRNGNSSLGTVLTLDPADKSPFLGDIKPGCSQSSLETNMYRAPLFPHKVSSTDYLLVRSAKGKLSIRRIDRIDVVGQQEPHMEVMSPGTKGLQTYIMNRLLVYMYREFRAGEKRGSLPCIRADELSAQFPNISEPFLRKRLKHCADLQKGSNGLLFWVMRRNFRIPLEEELRRMVTPENVCAYESMQAGLYRLKHLGITRLTLPTGLSSAMNQLPYEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRTAPKAPISNAMVKKKITVGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEELIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVDSDEIESDSEANSDLDSFAGDLENLLDAEECEDGEEGNCESKHDRTDGVRGLKMRRRPSQAQAEEEIEDEAAEAAELCRMLMDDDEAERKKKKKTRPVGEEEGLALGSQLNFGFENGQKMKKNSAVVKQLVSKVQPDGSYSQKEKAFRDSKEVESFLPKRNISGKAKILKKNDAARMGVLHKKIKIMGDGIKMFKEKKSARESFVCGACGQLGHMRTNKNCPKYGEDLEAQVEITEPEKASVKSSSLEHSAQLQQRTLIKKIIPKSATKMALVETSEGEKSSLKAKNLPVKFKCGSADRLPDKVAPGTTHGPDQPVISDAETGNKFVKVNKIIISNKMKPEDSQVESHKPSIVIRPPTETDKEHVESHKPSIVIRPPSEIDRDQVESHKPSNVTRPPTETDRDQVESHKPSIVIRPPVDTDRDQPRKKIIIKRPKEISLDQVSQDGSTGLEYRKTKKIVELSSFEKHKKPETKHLNEDAAKRKAREDKRLWEEEEKRRNAERLREERAKRLYEEEMRMLEEQERLAEIRKFEEAIRREREEEERQKARKKKKKKMPEMRDNHLEDYRTRRNDRRIPERDRSTKRRPVVELGKFGADYGPPTKRRRGGEVGLSNVLESIVDSLRDRYEVSYLFLKPVSKKEAPDYLDIIRDPMDLSTIREKVRKMEYKNREDFRHDVWQITYNAHKYNDGRNPGIPPLADQLLELCDYLLSENDASLTEAEAGIEYRDT* 1947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0371 1946 Gene3D - 659 747 - -
Vvi12g0371 1946 ProSiteProfiles Ubiquitin domain profile. 675 745 IPR000626 GO:0005515
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1248 1284 - -
Vvi12g0371 1946 Coils Coil 1720 1773 - -
Vvi12g0371 1946 Gene3D - 1745 1945 IPR036427 GO:0005515
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1557 1647 - -
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1775 1801 - -
Vvi12g0371 1946 SUPERFAMILY Ubiquitin-like 645 745 IPR029071 -
Vvi12g0371 1946 Pfam Bromodomain 1834 1908 IPR001487 GO:0005515
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1573 1647 - -
Vvi12g0371 1946 ProSiteProfiles Bromodomain profile. 1842 1912 IPR001487 GO:0005515
Vvi12g0371 1946 SMART ubq_7 675 747 IPR000626 GO:0005515
Vvi12g0371 1946 FunFam Transcription initiation factor TFIID subunit 1 1788 1942 - -
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1517 1537 - -
Vvi12g0371 1946 ProSitePatterns Bromodomain signature. 1847 1904 IPR018359 -
Vvi12g0371 1946 SMART bromo_6 1822 1932 IPR001487 GO:0005515
Vvi12g0371 1946 FunFam Transcription initiation factor TFIID subunit 1 657 747 - -
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1 28 - -
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 142 224 - -
Vvi12g0371 1946 PRINTS Bromodomain signature 1845 1858 IPR001487 GO:0005515
Vvi12g0371 1946 PRINTS Bromodomain signature 1859 1875 IPR001487 GO:0005515
Vvi12g0371 1946 PRINTS Bromodomain signature 1893 1912 IPR001487 GO:0005515
Vvi12g0371 1946 PRINTS Bromodomain signature 1875 1893 IPR001487 GO:0005515
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 72 91 - -
Vvi12g0371 1946 Pfam Protein of unknown function (DUF3591) 592 1162 IPR022591 -
Vvi12g0371 1946 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1945 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1756 1801 - -
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1254 1282 - -
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 1681 1722 - -
Vvi12g0371 1946 Pfam TATA box-binding protein binding 19 61 IPR009067 -
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 164 178 - -
Vvi12g0371 1946 MobiDBLite consensus disorder prediction 180 194 - -
Vvi12g0371 1946 Pfam Ubiquitin family 677 747 IPR000626 GO:0005515
Vvi12g0371 1946 Coils Coil 1278 1298 - -
Vvi12g0371 1946 Gene3D - 22 68 IPR036741 -
Vvi12g0371 1946 SUPERFAMILY TAF(II)230 TBP-binding fragment 27 62 IPR036741 -
Vvi12g0371 1946 CDD Ubl_TAFs_like 675 746 - -
Vvi12g0371 1946 SUPERFAMILY Bromodomain 1829 1932 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0371 Vvi-Chr12 4767165 4819528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0371 675 745 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.437 1.34e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0371 K03125 - vvi:100254115 3664.77