Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0363 ATGGAGCAGTACTTTCAAGAGGCCATGCCACAAAATGACTTAAACAAGGAAGACGGGTCTTCAATGGAGAATTGGAAACCTGTCTCTGCCGCGGACAATGGATCAGATAAAAATTCCTATGGTGGTTTTGACTGCAACATCTGCCTAGACTTTGTTCAGGATCCGGTGGTGACTCTCTGTGGTCATCTCTTCTGCTGGCCCTGCATTTACAAATGGCTTCATTTCCAGAGCATTTCTACTGAAAATCCAGACCAGAAACACCCTCAATGCCCCGTATGCAAAGCTGAAGTTTCAGACACCACCCTCATCCCACTATATGGCCGAGGCCAAGCAACAAAACCCTCCAACGCCAAGGCCCCACACCCAGACATCTTCATTCCACGAAGACCTTCTGGTCCCGCTTGTGGGGTCGATGCACCTCTAACACCCACCACAACAGCCAATCCACAGCCTTCTCGGCAACTTTATTATCGCAATTATCGGCACCATTCACAACCATACCATCCTCATCCCAGCAGTTATGCAGAGTCACCAATCCTTAGCCCTGGTGGCATGACAACGACCAGCACATACCATCCCATCATGGGAATGTTTGGAGAAATGGTCTATGCAAGGGTGTTTGGGAACTCGGTTCAAAATTTGTACACTTACCCAAACTCGTATCATCTTGCTGGAAACACAAGTTCGAGGATGAGAAGGCATGTAATGCAGGCGGATAAGTCGCTTAGCAGAATCTGTTTTTTCCTATTTTGCTGCATACTTTTGTGTCTTCTTTTGTTCTGA 783 0.4725 MEQYFQEAMPQNDLNKEDGSSMENWKPVSAADNGSDKNSYGGFDCNICLDFVQDPVVTLCGHLFCWPCIYKWLHFQSISTENPDQKHPQCPVCKAEVSDTTLIPLYGRGQATKPSNAKAPHPDIFIPRRPSGPACGVDAPLTPTTTANPQPSRQLYYRNYRHHSQPYHPHPSSYAESPILSPGGMTTTSTYHPIMGMFGEMVYARVFGNSVQNLYTYPNSYHLAGNTSSRMRRHVMQADKSLSRICFFLFCCILLCLLLF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0363 260 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Vvi12g0363 260 SUPERFAMILY RING/U-box 44 100 - -
Vvi12g0363 260 MobiDBLite consensus disorder prediction 1 33 - -
Vvi12g0363 260 CDD RING-HC_AtRMA-like 43 95 - -
Vvi12g0363 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 257 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi12g0363 260 SMART ring_2 45 93 IPR001841 -
Vvi12g0363 260 MobiDBLite consensus disorder prediction 1 18 - -
Vvi12g0363 260 ProSiteProfiles Zinc finger RING-type profile. 45 94 IPR001841 -
Vvi12g0363 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 108 IPR013083 -
Vvi12g0363 260 FunFam E3 ubiquitin-protein ligase RMA1H1 15 114 - -
Vvi12g0363 260 Pfam Zinc finger, C3HC4 type (RING finger) 45 93 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0363 Vvi-Chr12 4726497 4727279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0363 18 245 C3H Transcription Factor Family AT4G27470 40.517 3.41e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0363 K10666 - vvi:100257429 521.931