Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi12g0354 | ATGGGTCAGAGTGCTGGTTCAATGGGTGGCCGTCAATCCAAAGATGAGTTACTGTACCAACATGTAGCTACCGGAAATATAGAGGCCATCAAAGCTCTTTGCAGAGAAGGTGCTAGCCTTGAGTGGTTTGACAGTGAAGCAAAAACCCCTCTTATCGTGGCCTGCATGGATTCAAACCTAATTATGGTTGCCCAAACTCTGATTGACCTGGGTGCAAATGTCAATGCTTATCGGCCTGGGCGTGAAGCAGGTACTCCCTTACATCATGCAGCTAAAAGAGGCCTGGACCAGACTGTTAAGTTACTTCTCTCTAAAGGAGCAAATGCTTTAGTGAGGAATGATGATGGTCAAACGTCACTTGATGTTGCTAGAATAAATGGCTACATCAATGTTGTCCGGACAATTGAGAATCATATTTGCCTTTTCTCTGGTTGGTTGCGGGAGTTGCATGGTCCGGGCTTTCTCAAAGCATTAGCTCCTCAGTTGTTGTCAAGAAAAATTTGGGTTGTTATTATACCTTCTGGTTTCAATAATCCTTCAAAACCTCTCAGACTGGAGCTTGTCATATATTCTAATTTTCAGGATGCCCAGCCTTGTACGGTTATTGCTCTTGGGAATGTCAACATTGAGGAACCAAAATTCCACCAATCAGATCCAGCGCTGATAATTTTTGACAAGTCCAACAAGACTCGATACAAGCTAGCATCTGCCAATGAGGGTGACAAGCAGCAACTTCGGTGGTTATACAATGCTTGCAGAGGAATTCCTCAGGTTTTGCCTACTCCAATGCTTCATGATGCCCGACCTTCAGTTCCAGCAAGTCAAACGGCTACAGAAGCTGCAGAACTGGCAATGGCCGTGGGTGCCTCCATTCAGTCTGCTGCAGTGGATCAACCAGTGCTCCTTTCAAGTACCCGCCTGGGTTCAGAAGCAAGTAGCACAAATGGTTGGGGAAACCCAGTGGATAATACTAGTCATGGTGGATGGAGCCTTGATGGTACACCTACACATTCGGCTTCAAGTAGCAGTGGATGGGCAGATGAATCAAAAAGGGGAGAATTCAATGGGTTGGGTGTGCCTGAATCTAGGCTAATTCGCAATCAAACTCAACTTAACAAAACCCAGAATAACATTCCCCAAGTTGTCCAAACAAGCAACACAAATCCTGTATTGGCTTCTCCAGCTCCATCTGCTCCACCTATTCCTGAGGCTTTAACTGAAGGCCCAGTGTACTATCCACCAATTGATTTGAGCCCAGTGGACTTGTCTGTTCCAGCTGCAGAATATGATGCTGCAGGGACGAGTAAAACAAAGGATAAAGGTGATTCTTCCTCATGCGTGATCTGTTGGGAAGCCCCAATCGAAGGTGCATGCATTCCCTGTGGTCATATGGCTGGGTGCATGACTTGTTTGAATGAGATCAAAGCCAAGAAAGGGGTTTGCCCTGTTTGCCGAGCAAAGATACAGCAGGTTATAAAGCTTTATGCTGTTTGA | 1494 | 0.4578 | MGQSAGSMGGRQSKDELLYQHVATGNIEAIKALCREGASLEWFDSEAKTPLIVACMDSNLIMVAQTLIDLGANVNAYRPGREAGTPLHHAAKRGLDQTVKLLLSKGANALVRNDDGQTSLDVARINGYINVVRTIENHICLFSGWLRELHGPGFLKALAPQLLSRKIWVVIIPSGFNNPSKPLRLELVIYSNFQDAQPCTVIALGNVNIEEPKFHQSDPALIIFDKSNKTRYKLASANEGDKQQLRWLYNACRGIPQVLPTPMLHDARPSVPASQTATEAAELAMAVGASIQSAAVDQPVLLSSTRLGSEASSTNGWGNPVDNTSHGGWSLDGTPTHSASSSSGWADESKRGEFNGLGVPESRLIRNQTQLNKTQNNIPQVVQTSNTNPVLASPAPSAPPIPEALTEGPVYYPPIDLSPVDLSVPAAEYDAAGTSKTKDKGDSSSCVICWEAPIEGACIPCGHMAGCMTCLNEIKAKKGVCPVCRAKIQQVIKLYAV* | 498 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi12g0354 | 497 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 430 | 497 | IPR013083 | - | |
| Vvi12g0354 | 497 | ProSiteProfiles | Zinc finger RING-type profile. | 446 | 485 | IPR001841 | - | |
| Vvi12g0354 | 497 | MobiDBLite | consensus disorder prediction | 307 | 348 | - | - | |
| Vvi12g0354 | 497 | SUPERFAMILY | Ankyrin repeat | 16 | 140 | IPR036770 | - | |
| Vvi12g0354 | 497 | Pfam | Zinc finger, C3HC4 type (RING finger) | 444 | 491 | - | - | |
| Vvi12g0354 | 497 | Gene3D | - | 5 | 134 | IPR036770 | - | |
| Vvi12g0354 | 497 | PANTHER | ROLLING PEBBLES, ISOFORM B | 21 | 495 | - | - | |
| Vvi12g0354 | 497 | ProSiteProfiles | Ankyrin repeat region circular profile. | 46 | 76 | - | - | |
| Vvi12g0354 | 497 | SUPERFAMILY | RING/U-box | 442 | 491 | - | - | |
| Vvi12g0354 | 497 | MobiDBLite | consensus disorder prediction | 307 | 359 | - | - | |
| Vvi12g0354 | 497 | SMART | ANK_2a | 115 | 144 | IPR002110 | GO:0005515 | |
| Vvi12g0354 | 497 | SMART | ANK_2a | 13 | 42 | IPR002110 | GO:0005515 | |
| Vvi12g0354 | 497 | SMART | ANK_2a | 82 | 111 | IPR002110 | GO:0005515 | |
| Vvi12g0354 | 497 | SMART | ANK_2a | 46 | 76 | IPR002110 | GO:0005515 | |
| Vvi12g0354 | 497 | ProSiteProfiles | Ankyrin repeat profile. | 46 | 79 | IPR002110 | GO:0005515 | |
| Vvi12g0354 | 497 | ProSiteProfiles | Ankyrin repeat profile. | 82 | 114 | IPR002110 | GO:0005515 | |
| Vvi12g0354 | 497 | ProSiteProfiles | Ankyrin repeat region circular profile. | 82 | 114 | - | - | |
| Vvi12g0354 | 497 | Pfam | Ankyrin repeats (many copies) | 67 | 123 | IPR002110 | GO:0005515 | |
| Vvi12g0354 | 497 | CDD | RING-HC_XBAT35-like | 442 | 495 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi12g0354 | Vvi-Chr12 | 4625091 | 4633957 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi12g0354 | 439 | 494 | C3H Transcription Factor Family | AT3G06140 | 30.357 | 4.95e-07 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi12g0354 | - | - | vvi:100247153 | 972.23 |