Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0341 ATGGGTTGCATAGTTGGGAAGCCTTCCGCTATTAAAGATAGCCGGGAGAGTCCGAGGGAGAGGTTTCCGAATAAAGAATCAGCAGAAGCAAGGGGGCAAAGGTTGAATTCGCTGAGGCGAGAGGAGAGTGGTGATGTGAAAGTCGTGTTGATTGATAGGAAGGCAAACAGCTCAGTTCGGGTGTATGATGAGGATTACAAGTTGGAGAAGGAGAAGAGGGAAAGGAGTGAAGTCGGTGGAGTTAATCATCCAGGCATGGGTAGGGTTCCAAAGGCAAGTGAGGGAGAACAGGTGGCGGCGGGCTGGCCATCTTGGCTTGCTGCGGTGGCCGGTGAAGCCATCAAAGGTTGGATACCACGGCGTGCAGATACTTTTGAGAAGTTGGATAAAATTGGCCAAGGTACTTATAGCAATGTCTACAAGGGTCGTGATGTCACTCGTGGAAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACCATCTAGATCCCGAGAGTGTCAAATTTATGGCAAGGGAAATTCTTGTTTTGCGCCGGCTTGATCATCCAAATATAATAAAACTGGAAGGCTTGGTCACTTCAAGGAAGTCTTTCAGCCTGTACCTTGTTTTCGAGTATATGGAACATGATCTTACAGGACTTGCAGCGCTTCCAGGCTGCAAGTTCACAGAACCACAGATCAAATGCTACATGCAGCAACTACTCAGTGGTCTTGATCATTGTCATAGTCATGGTGTTCTGCATCGCGACATAAAGGGTTCAAATCTTCTAATTGACAATAATGGCATCCTGAAGATTGCAGATTTTGGCTTAGCTAGTTTTTTTGATCCTCATCGTAGTTTGTCAATGACGAGCCGTGTTGTGACTCTTTGGTATCGTCCGCCAGAACTTTTACTCGGAGCCACCCACTATGGAGTTTCTGTGGATTTATGGAGCGCAGGCTGCATACTTGGAGAATTATATGCTGGCAAGCCTATTATGCCCGGAAGGACAGAGGTTGAGCAATTGCACAGGATTTTTAAGCTTTGTGGCTCACCATCTGAGGATTTCTGGAGAAAATCAAAATTACCTCATTCAGCAGTGTTCAAACCTCAACAACCTTATAGATGTTGTGTTGCAGAAACATTTAAAGATTTTCCTGCTGCTACTGTAGGGCTTATGGAGACTTTACTTTCCATAGATCCTGCACATCGAGGAACTGCAGCTGCTGCTCTCAAGAGTGAGTTCTTCACAACAAAACCGCTTGCTTGTGATCCTTCAAGTTTGCCCAAGTATCCTCCCAGCAAAGAGATTGATGCAAAATTGCGGGAAGAAGAAGTTAGAAGGCAAGGAGCAGGAGGTGGCAGGGGCCAGAGGGTTGATCCAGAGAGGAGAGGATCCAAAGAATCTCGGGCAATTGCAGCACCAAATGCTAATGCTGAGTTAGCCATGTCGATGCAGAAGAGACAAGGCCAGGCTAATTCGAAGAGCCGAAGTGAGATGTTCTACCGTAATCAGGAGGAAGCTGCTTCTGGCTTTCCAATTGATCCACCTAGACAATCACAAGGTGTAAAAGAAGTGAGCAAAAATCTATTCGAGCATCATTCTGCTAGAGTTTCACATTCAGGGCCATTGGTTCGTGCTGCTGGATGGTCAAAGGCTGGAAAGAAACATGATGATCTTCCCATGACTTCAACTAGAGCTGACTTAGCAACATTATCTGGTCTAGTAGCAACTAGAACTTCATCTGAAGATCGCCGGGAAAAACCTGGTCCTTCAAAGCTAGAACCAAGAAACCAAATGAGCAGGTTTCCAGGATCAATGAATGAATCAGGAAAGCATGATCGGAAGCATCATAATAAGTTCAGTGAAGACTCTTATCTGACAGAAGATGGAAAAGGGAGTACTAAAGAACCGATTCTGCAAAGCAACCGATCCAATACAAACAAGATGTACTTCTCTGGTCCTTTACTCGTTACATCAAACAACGTGGATCAGATGCTGAAAGATCATGATCGTAAGGTCCAAGAACTTGATCGACGAGCTCGATTTGAGAAGATGAAAGTAGGGAAATATCAGTCTCAAGGGAAGCAGCAAGCAAGAGGCAATCCCCCAAAATATGTCCCCAGCAACGGTGTCCGACAAATGGGTGAATCAGACCTTCTTCATCTTCAACCTCCCTTTTCATCCATGTTTTCCCAGTTTCTCTCTCTCTTCCTCTCCTCTTTCTTCTTCCTCAATTCACCTTCAGTATCAGTATCAGCTACTGAGTTCATCTTCAACAGCTTCAACTCCACCAGCCTCTTGCTCTATGGCAACGCCACCATCCAAAATTCTCTTCTCTTTCTCACAAACGAGACCACCTTTTCCATCGGACGTGCTCTTTACCCTTCTAAAGTCCCCACAAGATCACCTAACTCAACCCACCTCCTTCCCTTCTCTTCCTCCTTCATTTTCTCCATTCCTCCCTACAAAAATCGCCTCCCTGGCCATGGGTTTGCCTTCTTATTTGCGCCCACCGCCGGCATGGATGGTGTAAGTTCATCTCAGCATCTCGGACTGTTTAATTTCACCAATGATGGAAAGTCGACTAACCATGTTTTTGCTGTTGAGTTTGATGTGTTTGAGAATCAAGAATTCAATGATATCGATGATAATCATGTAGGGGTGGATGTGAACTCATTGACATCTCTTACGTCCCATGAAGCAGGGTATTGGAGTGGGGAGGATGATGATGATGAGAACTTCGAAGAACTGGAGCTCAATAATGGCGAGAATTATCAAGTATGGATTGAGTATATGGATTCGCGAATAAATGTTACCATGGAGCGTGCAGGCAGGAAGAGGCCTGATCAGCCATTGATCAGCGCAGTTGTTAATCTTTCTGATGTTCTTCTAGATGAAATGTATGTGGGGTTTTGTGGAGCCACTGGACAGTTGGTTGAGGGTCATATCATTCTGTCATGGAGCTTCAGTCAATCGAATTTTTCGATCGGTGATGCTTTGGAAACCATGAATTTGGCTTCTTTTGTTCTTCCAAGGGGGTCTGTTTTTAGATCCAAAGGGTTTGCTTTAGGGGTTAGCCTTGGTTCTGCAGTTCTTCTTGTGGGGTTGGGGGTTATGTTGTATGTTGCTTTGGTCCGGAGGAGGAAGAAAAGGGCCATAGGGGAGGAAATCCAGGAATGGGAACTGGAGTACTGGCCTCACCGAATTGGTTACAGCGAAATTTACACTGCAACAGATGGTTTCTCAGAGAAAAACGTCATCGGGTTCAGCAGTAACGGCAAGGTCTATAAAGGGGTTCTGGTGGGAGGACCAGAAGTTGCAGTGAAGTCCATTCCTCATGAAAATGAGCATGGAATGAAAGCATTCCTGGCGGAGGTTTCCAGCCTAGGCAGGTTGAAGCATAGGAACTTAGTGGGGTTAAGAGGCTGGTGCAAGAAGGAGAAAGGAGACCTGATTTTGGTATATGATTATATGGAAAATGGGAGTTTGGAGAAGAGGATCTTCCACCAGTATCCTGAAAGTATGATGTTGAGCTGGGAAGAGAGGGCTCGAGTTCTGAAGGATGTTGGTCATGGGATCTTGTATTTGCATGAGGGCTGGGAAGCCACGGTCTTACACAGAGACATAAAGGCAAGCAATGTGTTGCTTGACAAGGATATGAATGCCAGACTAGGCGATTTCGGGTTAGCCCGGATGCATCATCATGGGGACTTGGCTAACACAACTCGGGTGGTTGGCACACTAGGATACATGGCTCCTGAAGTGATTAGAACCGGGCGAGCCACCGTCCAAACCGATGTGTTTGGCTTTGGGGTCCTGGTTCTAGAGGTGGTGTGTGGGAGGGAGCCTATCCAGCACAACAAGCCAGGCTTGGTTGATTGGGTATGGAGGTTGATGGAAAGAGGGGAGTTGGTTTTGGCTTTGGATGAGCGGCTTAAGGCTAGGGGAGAATACAGGGAGGAGGAAGTGGAGAGGGTCCTTCAGATTGGGTTGTTGTGTGCCCATCCGGACCCTCGCCGGAGACTGATGATGAGGCAAGTGGTCAAGGCTTTGGAGGGGAGAAGCGAGGGGTCTGAGCCTGAAGAGGGAATGGATGTGAGTTTGCTTCATTCTGCAGAGTGGTCTAAGCGTAATAGCTACTCTGACGGAGGAGGGCACCCTACATTTGATGAAATTCAAAAGAGTCTTCTTTGTTCCACATCTCTATCAGTGTCTGATATCATACTGGAGGGTCGGTGA 4221 0.4639 MGCIVGKPSAIKDSRESPRERFPNKESAEARGQRLNSLRREESGDVKVVLIDRKANSSVRVYDEDYKLEKEKRERSEVGGVNHPGMGRVPKASEGEQVAAGWPSWLAAVAGEAIKGWIPRRADTFEKLDKIGQGTYSNVYKGRDVTRGKIVALKKVRFDHLDPESVKFMAREILVLRRLDHPNIIKLEGLVTSRKSFSLYLVFEYMEHDLTGLAALPGCKFTEPQIKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHRSLSMTSRVVTLWYRPPELLLGATHYGVSVDLWSAGCILGELYAGKPIMPGRTEVEQLHRIFKLCGSPSEDFWRKSKLPHSAVFKPQQPYRCCVAETFKDFPAATVGLMETLLSIDPAHRGTAAAALKSEFFTTKPLACDPSSLPKYPPSKEIDAKLREEEVRRQGAGGGRGQRVDPERRGSKESRAIAAPNANAELAMSMQKRQGQANSKSRSEMFYRNQEEAASGFPIDPPRQSQGVKEVSKNLFEHHSARVSHSGPLVRAAGWSKAGKKHDDLPMTSTRADLATLSGLVATRTSSEDRREKPGPSKLEPRNQMSRFPGSMNESGKHDRKHHNKFSEDSYLTEDGKGSTKEPILQSNRSNTNKMYFSGPLLVTSNNVDQMLKDHDRKVQELDRRARFEKMKVGKYQSQGKQQARGNPPKYVPSNGVRQMGESDLLHLQPPFSSMFSQFLSLFLSSFFFLNSPSVSVSATEFIFNSFNSTSLLLYGNATIQNSLLFLTNETTFSIGRALYPSKVPTRSPNSTHLLPFSSSFIFSIPPYKNRLPGHGFAFLFAPTAGMDGVSSSQHLGLFNFTNDGKSTNHVFAVEFDVFENQEFNDIDDNHVGVDVNSLTSLTSHEAGYWSGEDDDDENFEELELNNGENYQVWIEYMDSRINVTMERAGRKRPDQPLISAVVNLSDVLLDEMYVGFCGATGQLVEGHIILSWSFSQSNFSIGDALETMNLASFVLPRGSVFRSKGFALGVSLGSAVLLVGLGVMLYVALVRRRKKRAIGEEIQEWELEYWPHRIGYSEIYTATDGFSEKNVIGFSSNGKVYKGVLVGGPEVAVKSIPHENEHGMKAFLAEVSSLGRLKHRNLVGLRGWCKKEKGDLILVYDYMENGSLEKRIFHQYPESMMLSWEERARVLKDVGHGILYLHEGWEATVLHRDIKASNVLLDKDMNARLGDFGLARMHHHGDLANTTRVVGTLGYMAPEVIRTGRATVQTDVFGFGVLVLEVVCGREPIQHNKPGLVDWVWRLMERGELVLALDERLKARGEYREEEVERVLQIGLLCAHPDPRRRLMMRQVVKALEGRSEGSEPEEGMDVSLLHSAEWSKRNSYSDGGGHPTFDEIQKSLLCSTSLSVSDIILEGR* 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0341 1406 FunFam probable serine/threonine-protein kinase At1g54610 208 448 - -
Vvi12g0341 1406 ProSiteProfiles Protein kinase domain profile. 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0341 1406 Gene3D Phosphorylase Kinase; domain 1 1037 1151 - -
Vvi12g0341 1406 SUPERFAMILY Concanavalin A-like lectins/glucanases 746 988 IPR013320 -
Vvi12g0341 1406 FunFam probable serine/threonine-protein kinase At1g54610 112 207 - -
Vvi12g0341 1406 MobiDBLite consensus disorder prediction 12 38 - -
Vvi12g0341 1406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Vvi12g0341 1406 FunFam L-type lectin-domain containing receptor kinase V.9 746 993 - -
Vvi12g0341 1406 MobiDBLite consensus disorder prediction 439 462 - -
Vvi12g0341 1406 SMART serkin_6 1075 1345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0341 1406 SMART serkin_6 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0341 1406 ProSiteProfiles Protein kinase domain profile. 1075 1383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0341 1406 MobiDBLite consensus disorder prediction 568 640 - -
Vvi12g0341 1406 CDD lectin_legume_LecRK_Arcelin_ConA 748 986 IPR001220 GO:0030246
Vvi12g0341 1406 Gene3D Phosphorylase Kinase; domain 1 112 207 - -
Vvi12g0341 1406 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Vvi12g0341 1406 MobiDBLite consensus disorder prediction 680 705 - -
Vvi12g0341 1406 Gene3D Transferase(Phosphotransferase) domain 1 1152 1362 - -
Vvi12g0341 1406 SUPERFAMILY Protein kinase-like (PK-like) 119 415 IPR011009 -
Vvi12g0341 1406 Gene3D Transferase(Phosphotransferase) domain 1 208 446 - -
Vvi12g0341 1406 MobiDBLite consensus disorder prediction 439 463 - -
Vvi12g0341 1406 Coils Coil 660 680 - -
Vvi12g0341 1406 FunFam L-type lectin-domain containing receptor kinase S.4 1152 1357 - -
Vvi12g0341 1406 MobiDBLite consensus disorder prediction 601 624 - -
Vvi12g0341 1406 MobiDBLite consensus disorder prediction 1 38 - -
Vvi12g0341 1406 Pfam Legume lectin domain 748 987 IPR001220 GO:0030246
Vvi12g0341 1406 CDD STKc_CDK9_like 125 409 - -
Vvi12g0341 1406 Gene3D - 746 998 - -
Vvi12g0341 1406 Pfam Protein kinase domain 1076 1343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0341 1406 Pfam Protein kinase domain 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0341 1406 SUPERFAMILY Protein kinase-like (PK-like) 1053 1346 IPR011009 -
Vvi12g0341 1406 PANTHER - 123 330 - -
Vvi12g0341 1406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1198 1210 IPR008271 GO:0004672|GO:0006468
Vvi12g0341 1406 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 1035 1151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0341 Vvi-Chr12 4410441 4424878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0341 125 329 Receptor kinase-like Gene Family AT4G04960 28.507 9.15e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi12g0341 Pkinase 2.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0341 - - vvi:100250631 1412.9