Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi12g0341 | ATGGGTTGCATAGTTGGGAAGCCTTCCGCTATTAAAGATAGCCGGGAGAGTCCGAGGGAGAGGTTTCCGAATAAAGAATCAGCAGAAGCAAGGGGGCAAAGGTTGAATTCGCTGAGGCGAGAGGAGAGTGGTGATGTGAAAGTCGTGTTGATTGATAGGAAGGCAAACAGCTCAGTTCGGGTGTATGATGAGGATTACAAGTTGGAGAAGGAGAAGAGGGAAAGGAGTGAAGTCGGTGGAGTTAATCATCCAGGCATGGGTAGGGTTCCAAAGGCAAGTGAGGGAGAACAGGTGGCGGCGGGCTGGCCATCTTGGCTTGCTGCGGTGGCCGGTGAAGCCATCAAAGGTTGGATACCACGGCGTGCAGATACTTTTGAGAAGTTGGATAAAATTGGCCAAGGTACTTATAGCAATGTCTACAAGGGTCGTGATGTCACTCGTGGAAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACCATCTAGATCCCGAGAGTGTCAAATTTATGGCAAGGGAAATTCTTGTTTTGCGCCGGCTTGATCATCCAAATATAATAAAACTGGAAGGCTTGGTCACTTCAAGGAAGTCTTTCAGCCTGTACCTTGTTTTCGAGTATATGGAACATGATCTTACAGGACTTGCAGCGCTTCCAGGCTGCAAGTTCACAGAACCACAGATCAAATGCTACATGCAGCAACTACTCAGTGGTCTTGATCATTGTCATAGTCATGGTGTTCTGCATCGCGACATAAAGGGTTCAAATCTTCTAATTGACAATAATGGCATCCTGAAGATTGCAGATTTTGGCTTAGCTAGTTTTTTTGATCCTCATCGTAGTTTGTCAATGACGAGCCGTGTTGTGACTCTTTGGTATCGTCCGCCAGAACTTTTACTCGGAGCCACCCACTATGGAGTTTCTGTGGATTTATGGAGCGCAGGCTGCATACTTGGAGAATTATATGCTGGCAAGCCTATTATGCCCGGAAGGACAGAGGTTGAGCAATTGCACAGGATTTTTAAGCTTTGTGGCTCACCATCTGAGGATTTCTGGAGAAAATCAAAATTACCTCATTCAGCAGTGTTCAAACCTCAACAACCTTATAGATGTTGTGTTGCAGAAACATTTAAAGATTTTCCTGCTGCTACTGTAGGGCTTATGGAGACTTTACTTTCCATAGATCCTGCACATCGAGGAACTGCAGCTGCTGCTCTCAAGAGTGAGTTCTTCACAACAAAACCGCTTGCTTGTGATCCTTCAAGTTTGCCCAAGTATCCTCCCAGCAAAGAGATTGATGCAAAATTGCGGGAAGAAGAAGTTAGAAGGCAAGGAGCAGGAGGTGGCAGGGGCCAGAGGGTTGATCCAGAGAGGAGAGGATCCAAAGAATCTCGGGCAATTGCAGCACCAAATGCTAATGCTGAGTTAGCCATGTCGATGCAGAAGAGACAAGGCCAGGCTAATTCGAAGAGCCGAAGTGAGATGTTCTACCGTAATCAGGAGGAAGCTGCTTCTGGCTTTCCAATTGATCCACCTAGACAATCACAAGGTGTAAAAGAAGTGAGCAAAAATCTATTCGAGCATCATTCTGCTAGAGTTTCACATTCAGGGCCATTGGTTCGTGCTGCTGGATGGTCAAAGGCTGGAAAGAAACATGATGATCTTCCCATGACTTCAACTAGAGCTGACTTAGCAACATTATCTGGTCTAGTAGCAACTAGAACTTCATCTGAAGATCGCCGGGAAAAACCTGGTCCTTCAAAGCTAGAACCAAGAAACCAAATGAGCAGGTTTCCAGGATCAATGAATGAATCAGGAAAGCATGATCGGAAGCATCATAATAAGTTCAGTGAAGACTCTTATCTGACAGAAGATGGAAAAGGGAGTACTAAAGAACCGATTCTGCAAAGCAACCGATCCAATACAAACAAGATGTACTTCTCTGGTCCTTTACTCGTTACATCAAACAACGTGGATCAGATGCTGAAAGATCATGATCGTAAGGTCCAAGAACTTGATCGACGAGCTCGATTTGAGAAGATGAAAGTAGGGAAATATCAGTCTCAAGGGAAGCAGCAAGCAAGAGGCAATCCCCCAAAATATGTCCCCAGCAACGGTGTCCGACAAATGGGTGAATCAGACCTTCTTCATCTTCAACCTCCCTTTTCATCCATGTTTTCCCAGTTTCTCTCTCTCTTCCTCTCCTCTTTCTTCTTCCTCAATTCACCTTCAGTATCAGTATCAGCTACTGAGTTCATCTTCAACAGCTTCAACTCCACCAGCCTCTTGCTCTATGGCAACGCCACCATCCAAAATTCTCTTCTCTTTCTCACAAACGAGACCACCTTTTCCATCGGACGTGCTCTTTACCCTTCTAAAGTCCCCACAAGATCACCTAACTCAACCCACCTCCTTCCCTTCTCTTCCTCCTTCATTTTCTCCATTCCTCCCTACAAAAATCGCCTCCCTGGCCATGGGTTTGCCTTCTTATTTGCGCCCACCGCCGGCATGGATGGTGTAAGTTCATCTCAGCATCTCGGACTGTTTAATTTCACCAATGATGGAAAGTCGACTAACCATGTTTTTGCTGTTGAGTTTGATGTGTTTGAGAATCAAGAATTCAATGATATCGATGATAATCATGTAGGGGTGGATGTGAACTCATTGACATCTCTTACGTCCCATGAAGCAGGGTATTGGAGTGGGGAGGATGATGATGATGAGAACTTCGAAGAACTGGAGCTCAATAATGGCGAGAATTATCAAGTATGGATTGAGTATATGGATTCGCGAATAAATGTTACCATGGAGCGTGCAGGCAGGAAGAGGCCTGATCAGCCATTGATCAGCGCAGTTGTTAATCTTTCTGATGTTCTTCTAGATGAAATGTATGTGGGGTTTTGTGGAGCCACTGGACAGTTGGTTGAGGGTCATATCATTCTGTCATGGAGCTTCAGTCAATCGAATTTTTCGATCGGTGATGCTTTGGAAACCATGAATTTGGCTTCTTTTGTTCTTCCAAGGGGGTCTGTTTTTAGATCCAAAGGGTTTGCTTTAGGGGTTAGCCTTGGTTCTGCAGTTCTTCTTGTGGGGTTGGGGGTTATGTTGTATGTTGCTTTGGTCCGGAGGAGGAAGAAAAGGGCCATAGGGGAGGAAATCCAGGAATGGGAACTGGAGTACTGGCCTCACCGAATTGGTTACAGCGAAATTTACACTGCAACAGATGGTTTCTCAGAGAAAAACGTCATCGGGTTCAGCAGTAACGGCAAGGTCTATAAAGGGGTTCTGGTGGGAGGACCAGAAGTTGCAGTGAAGTCCATTCCTCATGAAAATGAGCATGGAATGAAAGCATTCCTGGCGGAGGTTTCCAGCCTAGGCAGGTTGAAGCATAGGAACTTAGTGGGGTTAAGAGGCTGGTGCAAGAAGGAGAAAGGAGACCTGATTTTGGTATATGATTATATGGAAAATGGGAGTTTGGAGAAGAGGATCTTCCACCAGTATCCTGAAAGTATGATGTTGAGCTGGGAAGAGAGGGCTCGAGTTCTGAAGGATGTTGGTCATGGGATCTTGTATTTGCATGAGGGCTGGGAAGCCACGGTCTTACACAGAGACATAAAGGCAAGCAATGTGTTGCTTGACAAGGATATGAATGCCAGACTAGGCGATTTCGGGTTAGCCCGGATGCATCATCATGGGGACTTGGCTAACACAACTCGGGTGGTTGGCACACTAGGATACATGGCTCCTGAAGTGATTAGAACCGGGCGAGCCACCGTCCAAACCGATGTGTTTGGCTTTGGGGTCCTGGTTCTAGAGGTGGTGTGTGGGAGGGAGCCTATCCAGCACAACAAGCCAGGCTTGGTTGATTGGGTATGGAGGTTGATGGAAAGAGGGGAGTTGGTTTTGGCTTTGGATGAGCGGCTTAAGGCTAGGGGAGAATACAGGGAGGAGGAAGTGGAGAGGGTCCTTCAGATTGGGTTGTTGTGTGCCCATCCGGACCCTCGCCGGAGACTGATGATGAGGCAAGTGGTCAAGGCTTTGGAGGGGAGAAGCGAGGGGTCTGAGCCTGAAGAGGGAATGGATGTGAGTTTGCTTCATTCTGCAGAGTGGTCTAAGCGTAATAGCTACTCTGACGGAGGAGGGCACCCTACATTTGATGAAATTCAAAAGAGTCTTCTTTGTTCCACATCTCTATCAGTGTCTGATATCATACTGGAGGGTCGGTGA | 4221 | 0.4639 | MGCIVGKPSAIKDSRESPRERFPNKESAEARGQRLNSLRREESGDVKVVLIDRKANSSVRVYDEDYKLEKEKRERSEVGGVNHPGMGRVPKASEGEQVAAGWPSWLAAVAGEAIKGWIPRRADTFEKLDKIGQGTYSNVYKGRDVTRGKIVALKKVRFDHLDPESVKFMAREILVLRRLDHPNIIKLEGLVTSRKSFSLYLVFEYMEHDLTGLAALPGCKFTEPQIKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHRSLSMTSRVVTLWYRPPELLLGATHYGVSVDLWSAGCILGELYAGKPIMPGRTEVEQLHRIFKLCGSPSEDFWRKSKLPHSAVFKPQQPYRCCVAETFKDFPAATVGLMETLLSIDPAHRGTAAAALKSEFFTTKPLACDPSSLPKYPPSKEIDAKLREEEVRRQGAGGGRGQRVDPERRGSKESRAIAAPNANAELAMSMQKRQGQANSKSRSEMFYRNQEEAASGFPIDPPRQSQGVKEVSKNLFEHHSARVSHSGPLVRAAGWSKAGKKHDDLPMTSTRADLATLSGLVATRTSSEDRREKPGPSKLEPRNQMSRFPGSMNESGKHDRKHHNKFSEDSYLTEDGKGSTKEPILQSNRSNTNKMYFSGPLLVTSNNVDQMLKDHDRKVQELDRRARFEKMKVGKYQSQGKQQARGNPPKYVPSNGVRQMGESDLLHLQPPFSSMFSQFLSLFLSSFFFLNSPSVSVSATEFIFNSFNSTSLLLYGNATIQNSLLFLTNETTFSIGRALYPSKVPTRSPNSTHLLPFSSSFIFSIPPYKNRLPGHGFAFLFAPTAGMDGVSSSQHLGLFNFTNDGKSTNHVFAVEFDVFENQEFNDIDDNHVGVDVNSLTSLTSHEAGYWSGEDDDDENFEELELNNGENYQVWIEYMDSRINVTMERAGRKRPDQPLISAVVNLSDVLLDEMYVGFCGATGQLVEGHIILSWSFSQSNFSIGDALETMNLASFVLPRGSVFRSKGFALGVSLGSAVLLVGLGVMLYVALVRRRKKRAIGEEIQEWELEYWPHRIGYSEIYTATDGFSEKNVIGFSSNGKVYKGVLVGGPEVAVKSIPHENEHGMKAFLAEVSSLGRLKHRNLVGLRGWCKKEKGDLILVYDYMENGSLEKRIFHQYPESMMLSWEERARVLKDVGHGILYLHEGWEATVLHRDIKASNVLLDKDMNARLGDFGLARMHHHGDLANTTRVVGTLGYMAPEVIRTGRATVQTDVFGFGVLVLEVVCGREPIQHNKPGLVDWVWRLMERGELVLALDERLKARGEYREEEVERVLQIGLLCAHPDPRRRLMMRQVVKALEGRSEGSEPEEGMDVSLLHSAEWSKRNSYSDGGGHPTFDEIQKSLLCSTSLSVSDIILEGR* | 1407 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi12g0341 | 1406 | FunFam | probable serine/threonine-protein kinase At1g54610 | 208 | 448 | - | - | |
Vvi12g0341 | 1406 | ProSiteProfiles | Protein kinase domain profile. | 125 | 409 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi12g0341 | 1406 | Gene3D | Phosphorylase Kinase; domain 1 | 1037 | 1151 | - | - | |
Vvi12g0341 | 1406 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 746 | 988 | IPR013320 | - | |
Vvi12g0341 | 1406 | FunFam | probable serine/threonine-protein kinase At1g54610 | 112 | 207 | - | - | |
Vvi12g0341 | 1406 | MobiDBLite | consensus disorder prediction | 12 | 38 | - | - | |
Vvi12g0341 | 1406 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 245 | 257 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi12g0341 | 1406 | FunFam | L-type lectin-domain containing receptor kinase V.9 | 746 | 993 | - | - | |
Vvi12g0341 | 1406 | MobiDBLite | consensus disorder prediction | 439 | 462 | - | - | |
Vvi12g0341 | 1406 | SMART | serkin_6 | 1075 | 1345 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi12g0341 | 1406 | SMART | serkin_6 | 125 | 409 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi12g0341 | 1406 | ProSiteProfiles | Protein kinase domain profile. | 1075 | 1383 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi12g0341 | 1406 | MobiDBLite | consensus disorder prediction | 568 | 640 | - | - | |
Vvi12g0341 | 1406 | CDD | lectin_legume_LecRK_Arcelin_ConA | 748 | 986 | IPR001220 | GO:0030246 | |
Vvi12g0341 | 1406 | Gene3D | Phosphorylase Kinase; domain 1 | 112 | 207 | - | - | |
Vvi12g0341 | 1406 | ProSitePatterns | Protein kinases ATP-binding region signature. | 131 | 154 | IPR017441 | GO:0005524 | |
Vvi12g0341 | 1406 | MobiDBLite | consensus disorder prediction | 680 | 705 | - | - | |
Vvi12g0341 | 1406 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1152 | 1362 | - | - | |
Vvi12g0341 | 1406 | SUPERFAMILY | Protein kinase-like (PK-like) | 119 | 415 | IPR011009 | - | |
Vvi12g0341 | 1406 | Gene3D | Transferase(Phosphotransferase) domain 1 | 208 | 446 | - | - | |
Vvi12g0341 | 1406 | MobiDBLite | consensus disorder prediction | 439 | 463 | - | - | |
Vvi12g0341 | 1406 | Coils | Coil | 660 | 680 | - | - | |
Vvi12g0341 | 1406 | FunFam | L-type lectin-domain containing receptor kinase S.4 | 1152 | 1357 | - | - | |
Vvi12g0341 | 1406 | MobiDBLite | consensus disorder prediction | 601 | 624 | - | - | |
Vvi12g0341 | 1406 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Vvi12g0341 | 1406 | Pfam | Legume lectin domain | 748 | 987 | IPR001220 | GO:0030246 | |
Vvi12g0341 | 1406 | CDD | STKc_CDK9_like | 125 | 409 | - | - | |
Vvi12g0341 | 1406 | Gene3D | - | 746 | 998 | - | - | |
Vvi12g0341 | 1406 | Pfam | Protein kinase domain | 1076 | 1343 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi12g0341 | 1406 | Pfam | Protein kinase domain | 125 | 409 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi12g0341 | 1406 | SUPERFAMILY | Protein kinase-like (PK-like) | 1053 | 1346 | IPR011009 | - | |
Vvi12g0341 | 1406 | PANTHER | - | 123 | 330 | - | - | |
Vvi12g0341 | 1406 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1198 | 1210 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi12g0341 | 1406 | FunFam | Putative L-type lectin-domain containing receptor kinase VII.2 | 1035 | 1151 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi12g0341 | Vvi-Chr12 | 4410441 | 4424878 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi12g0341 | 125 | 329 | Receptor kinase-like Gene Family | AT4G04960 | 28.507 | 9.15e-13 | 70.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CDK-CRK7-CDK9 | Vvi12g0341 | Pkinase | 2.8e-66 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi12g0341 | - | - | vvi:100250631 | 1412.9 |