Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0338 ATGGAGTCTACCAGCCATTCTTCTTCGGTTTCCAAGGCTGAGAGAAAGATTGTGGAGAAAAACAGAAGAAATCTCATGAAGAACCTCTACTCCAAGCTCAACTCCCTCCTCCCAGATCAATCCTCCAAGGAAGCCCAATCAATCCCTGATCAAGTGGATGAAGCTGTAAGCTACATAAAATCCCTGCAGGGAAACCTGGAGAAACTCAAGGAGAAGAAAGAGAGCTTAATGAGCAGCAGAAAAAGGCCGCATACATGCAGTACTACCAGTGTTGGAGAAACTTCAACACCTAGCTTGAGGTCACCGGTAATGGAGATTCGGGAAATGGGCTCTAATTTACAGGTGACACTGGTGACTGGGCTGGAAGATCAGTCCATATTCTATGACATTATCGGCATACTCCATGAAGAAAGTGCTGAGGTCTTGAGTGCAAGTTTTTCAGTTGTTGGGAATTCAGCTTTCCATGTGCTTATTGCTCAGGTCGGGGATTCTACCTTCAGTTTTGGAACAAAGTGGATATGTGATAGACTCAACAAGTTTGTCCATGGATCTACAAGTGAAGAAGAACTACAACCAGAGTTGTGGGACTTTGAGTTTCATCCTGAAACTTGGGCATTCTAA 621 0.4428 MESTSHSSSVSKAERKIVEKNRRNLMKNLYSKLNSLLPDQSSKEAQSIPDQVDEAVSYIKSLQGNLEKLKEKKESLMSSRKRPHTCSTTSVGETSTPSLRSPVMEIREMGSNLQVTLVTGLEDQSIFYDIIGILHEESAEVLSASFSVVGNSAFHVLIAQVGDSTFSFGTKWICDRLNKFVHGSTSEEELQPELWDFEFHPETWAF* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0338 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983
Vvi12g0338 206 Coils Coil 52 79 - -
Vvi12g0338 206 Gene3D - 2 87 IPR036638 GO:0046983
Vvi12g0338 206 FunFam Transcription factor bHLH162 3 88 - -
Vvi12g0338 206 Pfam Helix-loop-helix DNA-binding domain 12 63 IPR011598 GO:0046983
Vvi12g0338 206 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 182 - -
Vvi12g0338 206 SMART finulus 16 68 IPR011598 GO:0046983
Vvi12g0338 206 MobiDBLite consensus disorder prediction 72 98 - -
Vvi12g0338 206 MobiDBLite consensus disorder prediction 81 98 - -
Vvi12g0338 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 81 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0338 Vvi-Chr12 4345366 4346263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0338 3 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.761 2.32e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi12g0338 HLH 6.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0338 - - vvi:100243748 394.045