Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0336 ATGAAAGCATGCTTCTTTCTTCCTGTTCTGCTTCTCTTCTCTCTTTCCTTCAAAGCTCATCTCTGCAGAGGTTCAGATACCATCTTCCCAGGCCAGTCTCTTTCTGGAAACCAAACAATCAGATCTGATGGCGGTACATTTGAACTGGGCTTCTTCACTCCAGGTAACTCTCGGAACTATTACATTGGCATATGGTATGGAAGACTACCCACTAAGACGGTAGTTTGGGTAGCAAATAGAAATCAGCCCCTCTCTGATCCATCTTCTTCCACATTACAACTTTCCCATGAAGGGAAGTTAGTCCTACTCACCCAGTCCAGAACAGAAATCTGGTCAACGAATGTGAGCTCCAATATACCTAATTCCACTGTTTCTGTTCTTCTAGACAATGGAAATTTAGTCGTGCGAGGGAATTCAAATTCCTCCAGTGTGGCGTGGCAGAGTTTTGATCACCCAACTGATACATGGCTGCCTGGTGGGAGGATTGGATACAGTAAGCTCACCAATGAAAAGATATTTCTGACTCCATGGAGAAATCCAGAAAATCCAGCACCTGGAATTTTCTCCATTGAGGTGGAACTGAATGGAACAAGTCATGTACTGCTATGGAATCATACTAAAATGTATTGGAGTAGTGGGGAGTGGACTGGCAAGAACTTTGTCAATGCTCCTGAAATAGAAAGAGACTATTACATTAAAAATTACAGGTATGTGAGGACAGAGAATGAAAGTTATTTCACCTATGATGCTGGTGTCCCTACGGCTGTCACTAGACTCCTGGTGGATTACACTGGGCAGTTCAAGCAGTTTGTTTGGGGAAAAGACTTCACGCAGTGGACTATCTTATGGATGCGGCCGACACTACAATGTGAAGTCTATGGTTTCTGCGGAGCTTTCAGTAGCTGCAATACTCAAAAGGAACCTCTTTGTGAGTGTATGCAAGGCTTTGAACCCACTATGCTTAAAGATTGGCAATTGGAAGACCATTCAGATGGGTGTGTGAGGAAGACCCCTCTGCAATGTGGAAATGGAGGAAATGACACCTTTTTTGTGATTTCCAATACAGCCTTTCCAGTTGATCCAGAGAAGTTGACAGTTCCGAAGCCTGAGGAATGTGAAAAAACTTGCTTGAGCAATTGTTCTTGCACTGCATATGCTTATGATAATGGGTGTTTGATCTGGAAAGGAGCTCTCTTTAATCTACAAAAGCTCCATGCTGATGATGAGGGTGGAAGAGATTTCCATGTGCGAATTGCAGCATCTGAGCTGGGGGAAACTGGAACAAATGCCACTAGAGCGAAGACCACAAGGGAGAAGGTCACTTGGATTCTCATTGGAACAATTGGAGGGTTCTTTCTGGTCTTTAGTATTGTTCTCATTCTTCTCCACAGGAGACAGAGGCGAACCTTCGGTCCACTTGGGGCAGGTGACAATTCTTTGGTGCTTTTTAAGTACAAAGATCTACAAAGTGCAACAAAGAACTTCTCAGAAAAACTTGGGGAAGGAGCATTTGGTTCTGTTTTCAAAGGCACATTGCCCAATTCAGCTGCCATAGCAGTGAAGAAACTTAAAAACCTAATGCAAGAAGAGAAGCAATTCCGTACAGAAGTGAGAAGCATGGGAACAATACAACACGCTAATCTTGTCCGCCTTCGAGGATTCTGTGCAAAAGCTTCAAAAAGATGTCTAGTCTTTGATTACATGCCCAATGGTTCCCTAGAATCTCACTTGTTTCAAAGGGATTCCAAGACTCTTGATTGGAAAACAAGATACAGCATTGCAATTGGGACTGCTAGAGGATTGGCTTACCTCCATGAGAAATGCAGAGACTGCATCATACATTGTGACATCAAGCCTGAGAACATTTTGCTGGACACTGAATTCAACCCAAAAGTGGCTGATTTCGGTCTTGCAAAGCTTATGGGACGAGACTTTAGCCGGGTTTTGACAACAATGAGAGGAACCATAGGCTACCTTGCACCAGAATGGCTTTCAGGTGAAGCTATCACACCAAAAGCTGATGTTTTCAGCTACGGAATGCTCCTTCTTGAGATTATATCAGGAAGGAGAAACAGAAACCTGTTAGATGATGGGACAAATGATTACTATCCCAATCGGGCTGCCAATACGGTGAACAGAGGGCACAATTTTCTTACCTTGTTAGATAAAAGGCTAGAGGGTAATGCCGATATGGAAGACCTGACTAGAGCCTGCAAGGTTGCCTGTTGGTGCATTCAAGATGATGAGAAGGACAGGCCAACCATGGGGCAGATAGTTCGAGTTCTGGAAGGAGTCTATGAAATGGGCACACCTCCAATCCCTTGTTTTTTCCAGCAATTTTTCCCAAGAAATACAGCTGACAGCGCCATTATTTACCAGGAGGTTTCTTCCAGCTCAAACTCATACCTCAGCATGAGTTTGAAATAA 2427 0.4368 MKACFFLPVLLLFSLSFKAHLCRGSDTIFPGQSLSGNQTIRSDGGTFELGFFTPGNSRNYYIGIWYGRLPTKTVVWVANRNQPLSDPSSSTLQLSHEGKLVLLTQSRTEIWSTNVSSNIPNSTVSVLLDNGNLVVRGNSNSSSVAWQSFDHPTDTWLPGGRIGYSKLTNEKIFLTPWRNPENPAPGIFSIEVELNGTSHVLLWNHTKMYWSSGEWTGKNFVNAPEIERDYYIKNYRYVRTENESYFTYDAGVPTAVTRLLVDYTGQFKQFVWGKDFTQWTILWMRPTLQCEVYGFCGAFSSCNTQKEPLCECMQGFEPTMLKDWQLEDHSDGCVRKTPLQCGNGGNDTFFVISNTAFPVDPEKLTVPKPEECEKTCLSNCSCTAYAYDNGCLIWKGALFNLQKLHADDEGGRDFHVRIAASELGETGTNATRAKTTREKVTWILIGTIGGFFLVFSIVLILLHRRQRRTFGPLGAGDNSLVLFKYKDLQSATKNFSEKLGEGAFGSVFKGTLPNSAAIAVKKLKNLMQEEKQFRTEVRSMGTIQHANLVRLRGFCAKASKRCLVFDYMPNGSLESHLFQRDSKTLDWKTRYSIAIGTARGLAYLHEKCRDCIIHCDIKPENILLDTEFNPKVADFGLAKLMGRDFSRVLTTMRGTIGYLAPEWLSGEAITPKADVFSYGMLLLEIISGRRNRNLLDDGTNDYYPNRAANTVNRGHNFLTLLDKRLEGNADMEDLTRACKVACWCIQDDEKDRPTMGQIVRVLEGVYEMGTPPIPCFFQQFFPRNTADSAIIYQEVSSSSNSYLSMSLK* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0336 808 ProSiteProfiles PAN/Apple domain profile. 341 419 IPR003609 -
Vvi12g0336 808 FunFam Serine/threonine-protein kinase 568 770 - -
Vvi12g0336 808 CDD STKc_IRAK 499 764 - -
Vvi12g0336 808 SMART ntp_6 344 418 IPR003609 -
Vvi12g0336 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Vvi12g0336 808 Pfam D-mannose binding lectin 73 178 IPR001480 -
Vvi12g0336 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Vvi12g0336 808 ProSitePatterns Protein kinases ATP-binding region signature. 499 522 IPR017441 GO:0005524
Vvi12g0336 808 Gene3D - 20 150 IPR036426 -
Vvi12g0336 808 Gene3D Transferase(Phosphotransferase) domain 1 568 770 - -
Vvi12g0336 808 CDD PAN_AP_plant 337 419 - -
Vvi12g0336 808 Pfam Protein kinase domain 496 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0336 808 PANTHER OS07G0415500 PROTEIN 6 776 - -
Vvi12g0336 808 PIRSF SRK 1 808 IPR024171 GO:0004674
Vvi12g0336 808 SMART blect_4 31 152 IPR001480 -
Vvi12g0336 808 SUPERFAMILY Protein kinase-like (PK-like) 478 763 IPR011009 -
Vvi12g0336 808 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 711 769 - -
Vvi12g0336 808 Gene3D Phosphorylase Kinase; domain 1 462 567 - -
Vvi12g0336 808 ProSiteProfiles Protein kinase domain profile. 493 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0336 808 FunFam Serine/threonine-protein kinase 20 149 - -
Vvi12g0336 808 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Vvi12g0336 808 CDD B_lectin 32 152 IPR001480 -
Vvi12g0336 808 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Vvi12g0336 808 SMART serkin_6 493 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0336 808 Pfam PAN-like domain 341 400 IPR003609 -
Vvi12g0336 808 FunFam Receptor-like protein kinase 4 461 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0336 Vvi-Chr12 4307165 4309591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0336 483 772 Receptor kinase-like Gene Family AT5G20050 42.857 9.84e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0336 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0336 - - vvi:100267794 1635.16