Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0335 ATGGCAACTGACACCATTTTCCCAGGCCAGACTCTTTCTGGCAACCAGACAATCAGATCCGATGGTGGAACGTTTGAACTGGGCTTCTTCACTCCAGGTAACTCTTCAAACTATTACATTGGCATGTGGTACGGAAGGCTACCCACCAAGACAGTGGTTTGGGTAGCAAATAGAGACCAGCCCCTCTCTGATCCATCTTCTTCCACATTACAACTTTCCCATGATGGGAGGTTAGTCCTACTCAAAGAGTCCAGAACTGAAATCTGGTCGACAGATGTGAACTCTACTACACCTAATTCCACCATTGCTGTTCTTCTCGACAATGGAAATTTAGTTGTACGGGGGAGGTCGAATTCATCCAGTGTATTGTGGCAGAGTTTTGATCACCCAACTGATACGTGGCTGCCTGGTGGGAAGATTGGGGACAGTAAGCATGGCAAGGGAAAGATAGTTCTGACTCCATGGAGAAGCCCAGAGAATCCAGCAACTGGGATTTTCTCCGTTGATGTGGGACCAAATGGAACAAGTCATATACTGCTATGGAATCATACTAAAATCTATTGGAGTAGTGGGGAGTGGACGGGGAAGAACTTCGTCAATGTTCCTGAAATAGACAAAAACTATTACGTTAAAAATTTCAGGCATGTGAAGACGGAGAATGAAAGCTATTTCACCTATGATGCTGGTGTCCCTACGGCTGTCACTAGATTCCTGCTGGATTACACTGGGCAGCTCAAGCAGTTCGTTTGGGGGGAAGGCTTCACGCAGTGGACCATCTTTTGGACGCGGCCGACACTACAATGTGAAGTCTATGGTTTCTGTGGGGCTTTCAGTAGCTGCAATAATCAGAAGGAGCCTCTTTGTGAGTGCATGCAAGGTTTTGAACCCACTGTCCTTAAATATTGGGAATTGGAAGACCATTCGGATGGGTGTGTGAGGAAGACCCCTCTAGAATGTGGAAATGGAGGAAATGATACCTTTTTTGTGATTTCCAACACAGTCTTTCCAGTTGATTCAGAGAATTTGACTGTTACCACGTCTGAGGAATGTGAAAAAGCTTGTCTGAGCAATTGTTCCTGCACTGCATATGCTTATGATAATGGGTGTTTGATCTGGAAAGGAGATCTCTTCAATCTTCGAAAACTCCAGGATGATAATGAGGGTGGAAAAGATTTACATGTAAGAATTGCAGCGTCTGAGCTGGTGGAAACTGGAACAAACACCACTAGAGAGAAGGCCACCACAGAGAAGGTCACTTGGATTCTCATCGGGACAATTGGAGGGTTCCTTCTGCTCTTTGGTATTCTTCTGGTTGTTTTCTGCAGGAGACACAGGCGACCCAACAAAGCACTCGAGGCATCTGACGATTCTCTGGTGCTCTTTAAGTACCGGGATCTGCGAAAAGCAACGAAGAACTTCTCCGAAAAACTTGGAGAAGGAGGATTTGGTTCTGTTTTCAAAGGCACCTTGCCCAACTCAACTGTCATTGCTGTGAAGAAGCTCAAAAATCTAACACAAGAGGAGAAGCAGTTCCGCACGGAAGTGAGCAGCATTGGAACAATCCAGCATATCAATCTTGTCCGCCTTCGGGGATTCTGCGCAGAAGCTTCAAAAAGATGTCTAGTCTTTGATTACATGCCCAATGGTTCTCTAGAACATCACCTGTTTCGAAAGGATTCCAAGATCCTGGACTGGAAAACAAGGTATGATATTGCAGTGGGAACTGCCAGAGGATTGGCTTACCTCCATGAGAAATGCAGAGACTGCATCATACATTGTGACATCAAGCCTGAGAACATTCTATTGGATGCTGCATACAACCCAAAGGTGGCTGATTTTGGGCTTGCCAAGCTCATAGGAAGAGACTTCAGCCGTGCGCTAACCACTATGAGAGGAACCAGAGGCTACCTTGCACCAGAATGGCTTTCGGGTGAAGCCATCACACCAAAAGCTGATGTTTTCAGCTATGGAATGCTGCTTTTCGAGGTTGTATCAGGAGGGAGAAACAGAGACCTGTTAGAAGATGGGACAGATGATTACTTTCCCACCCGAGTTGTTGATGTAATAAACAGAGGAGACGATGTTCTTACCTTGTTAGATAGCAGACTAGAAGGTAATGCCACCATGGAAGAGCTCACCAGAGCCTGCAAAGTAGCTTGTTGGTGCATTCAGGACAATGAGAAGGACAGACCAACAATGGGGCAGATAGTTCAGATTCTGGAGGGAGTCTCAGAAGTGGGTACACCTCCAATGCCTCGGTTTCTCCAGAATCTCTCGGGAAATCCAGCCGATGGTGCCATCAATTTCCAGGAGACTTCTTCAGAAGCTTGA 2331 0.4612 MATDTIFPGQTLSGNQTIRSDGGTFELGFFTPGNSSNYYIGMWYGRLPTKTVVWVANRDQPLSDPSSSTLQLSHDGRLVLLKESRTEIWSTDVNSTTPNSTIAVLLDNGNLVVRGRSNSSSVLWQSFDHPTDTWLPGGKIGDSKHGKGKIVLTPWRSPENPATGIFSVDVGPNGTSHILLWNHTKIYWSSGEWTGKNFVNVPEIDKNYYVKNFRHVKTENESYFTYDAGVPTAVTRFLLDYTGQLKQFVWGEGFTQWTIFWTRPTLQCEVYGFCGAFSSCNNQKEPLCECMQGFEPTVLKYWELEDHSDGCVRKTPLECGNGGNDTFFVISNTVFPVDSENLTVTTSEECEKACLSNCSCTAYAYDNGCLIWKGDLFNLRKLQDDNEGGKDLHVRIAASELVETGTNTTREKATTEKVTWILIGTIGGFLLLFGILLVVFCRRHRRPNKALEASDDSLVLFKYRDLRKATKNFSEKLGEGGFGSVFKGTLPNSTVIAVKKLKNLTQEEKQFRTEVSSIGTIQHINLVRLRGFCAEASKRCLVFDYMPNGSLEHHLFRKDSKILDWKTRYDIAVGTARGLAYLHEKCRDCIIHCDIKPENILLDAAYNPKVADFGLAKLIGRDFSRALTTMRGTRGYLAPEWLSGEAITPKADVFSYGMLLFEVVSGGRNRDLLEDGTDDYFPTRVVDVINRGDDVLTLLDSRLEGNATMEELTRACKVACWCIQDNEKDRPTMGQIVQILEGVSEVGTPPMPRFLQNLSGNPADGAINFQETSSEA* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0335 776 Gene3D Transferase(Phosphotransferase) domain 1 546 748 - -
Vvi12g0335 776 PANTHER OS07G0415500 PROTEIN 5 752 - -
Vvi12g0335 776 FunFam Serine/threonine-protein kinase 1 127 - -
Vvi12g0335 776 ProSiteProfiles Protein kinase domain profile. 471 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0335 776 PIRSF SRK 1 776 IPR024171 GO:0004674
Vvi12g0335 776 Pfam PAN-like domain 319 379 IPR003609 -
Vvi12g0335 776 CDD B_lectin 10 130 IPR001480 -
Vvi12g0335 776 SMART blect_4 9 130 IPR001480 -
Vvi12g0335 776 ProSiteProfiles PAN/Apple domain profile. 319 397 IPR003609 -
Vvi12g0335 776 CDD STKc_IRAK 477 742 - -
Vvi12g0335 776 SMART serkin_6 471 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0335 776 Pfam Protein kinase domain 474 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0335 776 FunFam Serine/threonine-protein kinase 546 748 - -
Vvi12g0335 776 Pfam S-locus glycoprotein domain 188 297 IPR000858 GO:0048544
Vvi12g0335 776 ProSitePatterns Protein kinases ATP-binding region signature. 477 500 IPR017441 GO:0005524
Vvi12g0335 776 Gene3D - 1 128 IPR036426 -
Vvi12g0335 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 37 193 IPR036426 -
Vvi12g0335 776 Pfam D-mannose binding lectin 51 156 IPR001480 -
Vvi12g0335 776 SMART ntp_6 322 396 IPR003609 -
Vvi12g0335 776 FunFam Receptor-like protein kinase 4 438 545 - -
Vvi12g0335 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Vvi12g0335 776 SUPERFAMILY Hairpin loop containing domain-like 327 378 - -
Vvi12g0335 776 ProSiteProfiles Bulb-type lectin domain profile. 3 126 IPR001480 -
Vvi12g0335 776 CDD PAN_AP_plant 315 397 - -
Vvi12g0335 776 Gene3D Phosphorylase Kinase; domain 1 438 545 - -
Vvi12g0335 776 SUPERFAMILY Protein kinase-like (PK-like) 455 741 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0335 Vvi-Chr12 4301766 4304096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0335 461 750 Receptor kinase-like Gene Family AT5G20050 43.182 5.71e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0335 Pkinase 4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0335 - - vvi:109121483 1586.62