Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0331 ATGGAAGTTCAAGATCTTGACAAGCATATCAAACAACAGAAGATGCTTCCACCTCCAGTTGGAATCTTTCAGACGCGTGAAGACCTTCTCAAACATGTCCGTGACTTTGCCTTGTCACAAGGATATATGGTATCTATTAAAGATTCTTCCAAGGATAGGTATGTGACCGTTGCCTGTGATAAGGGTGGTGTTTACCGTAAAAGGCTTAAGTCTGGTGATAATATGCGGCAAAGGAAAATGCCCTCTCGGCTTACAAATTGTCCATTTGAAGTTGTGGGGAAAAAAGATGATGAGCTGTGGACACTCACCATTAAGCATGGAGAACACAATCATGAACCAGCGACAGATATCTCTGACCACCCCTCTTGCCGCCGTTTCACAGAAGAGGAGATCTTAATAATAAGAGAAATGAGCACAGCTGGTAAACGGCCACGCCAAATTCTCAAGGTGCTGAGGCAGAGGAATCCAAATCTCATATTGGATTCCAGGAATGTTTACAATGTCAAAGCCAAGATCCGTCGGGAGAGTCTCTCAGCCAAGAACATGGATTCACCGTCATCCTCGTCAGCAGCGACAATGGGAGTGCCGTCAGAAGGTGCAGTGGGAAATGTAAATGGAAATGAAGTGGGAACGACGGCGTCTTTTGCTGGGTACATGGAGACGAGAGGAGTGAGGGAGGCGAGAGTGTTGGCATCGGAGCTATGCCGGCACATGTACACACTTGGGTGGTTCTCTGGTACTGGAGGCAGCATCACCATAAAAGTTCATGATGATTCCATACCTAAACCTCGTCAGCTTGTTGTCATTTCGCCTTCCGGTGTTCAGAAAGAGAGAATGGTTCCAGAGGACATGTATGTGCTTTCTTCAGATGGGTTTATATTGTCAACACCTCCTCTTAAGCCTTACCCTCATAAACCACCCAAGTGTACTGATTGTACTCCTCTCTTCATGAAGGTTTATGAAATGCGTGATGCTGGGGCTGTTATTCATAGTCATGGAATGGAGTCTTGTATTGTAACGATGATCCTCCCTTTCTCAAAGGAATTTCGAATAACTCATATGGAGATGATTAAGGGAATTAAGGGACATGGTTATCATGATGAGCTTGTGGTCCCAATAATTGAGAACACTGCCCATGAAGCAGAGCTTGTTGAATCTCTTACTGAAGCGATCACAGCTTACCCAAAAACAACAGCTGTGCTTGTTCGCAACCATGGGGTGTATGTATGGGGAGACTCATGGATCAGTGCTAAGACTCAGGCTGAATGCTATCACTATCTTTTTGATGCTGCTATCAAGCTTCATCAGTTGGGATTAGACTGGTCAACGCCAACTCATGGTCCCATTCGCAGTATAAATGGAATTTGGGGTTGCAATGGAACTATGAGTAGGGGTCTGAAAGTTGGGGGTCTGAGCTTGGATGATATGATTGAACCTTCTCAACGCTGTATACTTCTTGACATTGAAGGGACAACTACTCCTATATCATTTGTTACAGATGTTCTTTTTCCCTATGCCCATGCCAATGTGGGAAAGCATTTAGCTGCAACATTTGATAGTGAAGAAACTCAAGATGATATAAATTTGTTGCGCTCTCAAATTCAGCATGATTTGGAACATGGTGTTGTTGGTGCTGTGCCCATCCCTCCAGATTATGTGGGCAAAGAGTTGGTGATTGCTTCTTTTGTTGCTAATGTTGAAGCAATGATTAGGGCCGACAGAAACATTACTGCCCTAAAACAATTACAAGGTCATATATGGAAGACTGGATTTCAAAGTAATGAGTTGGTGGGTGTTGTATTTGATGATGTACCAGAAGCTCTTGAGAGGTGGCATGCTTCAGGCATCAAGGTTTACATATATTCTAGTGGCAGCCGGGAGGCCCAACAGCTTATTTTCTCCAATTCTAATTATGGGGACTTGAGAAAATACTTCTGTGGCTTTTTTGATACAACAATGGGAAACAAGAAAGAGACACACAGTTACTTCGAGATTTTGCGGACAGTGGGAATAGATAGGCCATCTGACATGTTATTTGTGACAGATGTCTTCCAAGAAGCTGTTGCTGCAAGGGCTGCAGGTTTGGAAGTGGTAATCTCCATCCGGCCGGGAAATGGACCTCTCCCAGAAAATCATGGGTTTAGAACTATAGAAACCTTTTTGGAAATCTAA 2172 0.4388 MEVQDLDKHIKQQKMLPPPVGIFQTREDLLKHVRDFALSQGYMVSIKDSSKDRYVTVACDKGGVYRKRLKSGDNMRQRKMPSRLTNCPFEVVGKKDDELWTLTIKHGEHNHEPATDISDHPSCRRFTEEEILIIREMSTAGKRPRQILKVLRQRNPNLILDSRNVYNVKAKIRRESLSAKNMDSPSSSSAATMGVPSEGAVGNVNGNEVGTTASFAGYMETRGVREARVLASELCRHMYTLGWFSGTGGSITIKVHDDSIPKPRQLVVISPSGVQKERMVPEDMYVLSSDGFILSTPPLKPYPHKPPKCTDCTPLFMKVYEMRDAGAVIHSHGMESCIVTMILPFSKEFRITHMEMIKGIKGHGYHDELVVPIIENTAHEAELVESLTEAITAYPKTTAVLVRNHGVYVWGDSWISAKTQAECYHYLFDAAIKLHQLGLDWSTPTHGPIRSINGIWGCNGTMSRGLKVGGLSLDDMIEPSQRCILLDIEGTTTPISFVTDVLFPYAHANVGKHLAATFDSEETQDDINLLRSQIQHDLEHGVVGAVPIPPDYVGKELVIASFVANVEAMIRADRNITALKQLQGHIWKTGFQSNELVGVVFDDVPEALERWHASGIKVYIYSSGSREAQQLIFSNSNYGDLRKYFCGFFDTTMGNKKETHSYFEILRTVGIDRPSDMLFVTDVFQEAVAARAAGLEVVISIRPGNGPLPENHGFRTIETFLEI* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0331 723 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 591 723 - -
Vvi12g0331 723 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 216 440 IPR027514 GO:0005737|GO:0019509|GO:0046872
Vvi12g0331 723 Pfam Class II Aldolase and Adducin N-terminal domain 233 431 IPR001303 -
Vvi12g0331 723 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 482 721 - -
Vvi12g0331 723 SUPERFAMILY HAD-like 482 722 IPR036412 -
Vvi12g0331 723 Gene3D - 495 591 - -
Vvi12g0331 723 Gene3D - 592 722 IPR023214 -
Vvi12g0331 723 Gene3D - 225 449 IPR036409 -
Vvi12g0331 723 NCBIfam HAD-IA family hydrolase 602 694 IPR006439 -
Vvi12g0331 723 NCBIfam methylthioribulose 1-phosphate dehydratase 232 437 IPR017714 GO:0005737|GO:0019509|GO:0046872
Vvi12g0331 723 SMART Aldolase_II_2 229 432 IPR001303 -
Vvi12g0331 723 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 224 449 - -
Vvi12g0331 723 SUPERFAMILY AraD/HMP-PK domain-like 226 443 IPR036409 -
Vvi12g0331 723 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 216 723 IPR027505 -
Vvi12g0331 723 SFLD enolase-phosphatase 482 721 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi12g0331 723 Pfam haloacid dehalogenase-like hydrolase 482 694 - -
Vvi12g0331 723 PANTHER ENOLASE-PHOSPHATASE E1 468 723 - -
Vvi12g0331 723 CDD HAD_EP 483 704 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi12g0331 723 NCBIfam acireductone synthase 482 720 IPR023943 GO:0000287|GO:0019509|GO:0043874
Vvi12g0331 723 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 495 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0331 Vvi-Chr12 4247590 4265231 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi12g0331 Hydrolase 1.7e-06 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0331 K16054 - vvi:100247253 1451.42