Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0328 ATGAAAACAAGGAAAACACTTTTTCAAAACAATTCTACACCAAATTTTAAAAGCAAAAACATCTCAAACGGTTGCGAAACCACGTCAATCTCCATGTCATTGAACACATTGAAGGAGACCCTCAGGCAGTGCACAAACCCATCATCCTCCACGCTCATCTCTTACACAAACTCCTCAATTTCACGTGAAATCGATCCCATAAACCCTAGAAAACCGCCCAAATCATCCCTCTCTAAGCAGCTTCAACGTCTCCAAGACCCCTTCTCTTTACCCCAAATTCAACCGCGGAACCAACAAAAACAGTCACTAGACCATGAAGAAGAAGAAGAAGTAGAAGCACAAGAAGGGTTTGAGAAACCCCAGTTGGGTTTTCTTCAATTTGACCTCACGGGTCCTTTTGTACCGTTGGTCTTGTCTTCGGACGATGAAGTTCCGGTGATACAGGTTCCAGCATCTATTAACCATAGGCTTCTTGAACATCAAAGAGAAGGAGTGAAGTTCTTGTACAATTTGTACAAGCACAACCATGGAGGTGTTCTTGGAGATGACATGGGACTGGGGAAGACCATTCAAACAATTGCATTCTTGGCTGCTATGTTTGGAAAAGATGGAGAATGTGGTGACTCCACGATACTTAAGGGAAATCAGATGGGAAAGAAGGGTCCCGTGTTAATTGTTTGCCCAACTTCTGTTATTCACAATTGGGAAAGCGAATTCTCTAAGTGGGCAACTTTTAGTGTCTCTGTTTACCATGGTGCAAATCGTGATCTCATTCTCGACAAACTAGAAGCACATGGAGTGGAGATACTTATTACCAGTTTTGACACATACCGAATTCATGGCAGCATCTTGTCAGAGGTTCCGTGGGAGATAGTGGTCATTGATGAGGCCCATCGACTGAAAAATGAAAAATCAAAACTTTACACTGCTTGTTTAGAAATTAAAACTTGTAAACGAATTGGTCTGACAGGAACCATAATGCAGAACAAAATTATGGAATTGTTCAATCTCTTTGACTGGGTGGCACCAGGTTGTTTGGGAACACGGGAACATTTCCGGGAGTTTTATGATGAACCCCTCAAGCATGGCCAGAGGTCAACTGCTCCTGAAAGATTTGTCCGGGTTGCTGATGAGCGAAAACAACACTTAGTGGCAGTTCTACATAAATATCTTCTAAGAAGGACAAAAGAAGAGACTATTGGCCATCTTATGATGGGAAAGGAAGATAATGTTGTATTTTGTGCGATGAGTGAGTTGCAAAAACGGGTTTATACAAGGATGTTACAGTTACCAGATATCCAGTGCCTCATAAATAAGGATCTCCCATGCAGCTGTGGTAGCCCTCTTACTCAAGTTGAATGTTGTAAAAGGACTGTACCAAATGGAGTCATCTGGTCATACCTTCACAGGGACAATCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTTCTTCCTTGTCTTGTCAAGCTCCTGCAGATAAGCAATCACTTGGAGCTGATTAAACCTAACCCCAGGGATGACCCTGATAAACAAAGAAAAGATGCTGAATTTGCATCTGCTGTGTTTGGTACTGACATTGATTTGGTGGGGGGAAACACTCAGAGTGAGAGTTTTATGGGCCTAAGTGATGTTAAACACTGTGGCAAGATGCGAGCATTGGAAAAGTTAATGTTGTCTTGGGTTTCACATGGTGACAAAATTCTTCTGTTCAGTTACTCCGTCAGGATGTTGGACATTCTGGAGAAGTTTCTTATACGCAAAGGTTATTGCTTCTCAAGACTTGATGGTTCCACTCCAACCAACTTGCGTCAATCTCTTGTTGATGACTTCAACTCAAGTCCAAGCAAGCAAGTGTTTCTTATATCAACCCGAGCTGGTGGGCTTGGACTGAATCTTGTCAGTGCAAACCGCGTAGTAATATTTGATCCAAACTGGAATCCTGCTCAAGATTTACAGGCCCAGGACAGGTCATTTCGTTATGGGCAAAAGCGTCATGTTGTGGTGTTCCGCCTTCTTGCAGCTGGTTCTCTTGAGGAACTTGTTTATTCCCGTCAAGTGTACAAACAGCAGCTGTCAAATATTGCAATTTCTGGAAAAATGGAAAAACGATATTTTGAGGGTGTCCAGGACTGCAAGGAATTTCAAGGCGAACTTTTTGGGATCTGCAACTTATTTCGTGATCTATCTGATAAGCTTTTTACCAGTGAGATCATAGAGTTACATGAAAATCAAAGACAAGATCATGGGCACAATCGTAGTACAAAAATGGATTTAAGTGAACTTGGAAGCTACTTCGTGCAATCAAAAGAAGCTATTGAAACAGTTTCCTCAGCGCCTGAAAGCAGAAAGCCTAAATATTTTAAGAGTGATACAACGCTCGAAGACTTGGGTATTGTGTATGCCCACCGAAACGAAGATATCGTCAATTTTGGTCCCACAATTCAAGGGAAGGAAGAAGCGTCTGTTGCTCAGCATGATGGCCAGAGGCAATCGCATATCCCTGTTGCAGAGAAAAGAAGACCAAATGGAGTATCTAGAAAAGAGAATGCTTCTTCAGCCAAGGACTGGAAAAAGAGAGAATTTAGCCTCCTGGCTCAGTTCATGGGCATGAAAGAGGTTGAATTCAGCAAGTGGCTGCTAGCGGCAGCTCCTTCAGAGCGTGAGAAAGTGCTTCAAGATTACAAGAAGAGAAAGAAGAAAATACCTAATGGATGA 2718 0.4238 MKTRKTLFQNNSTPNFKSKNISNGCETTSISMSLNTLKETLRQCTNPSSSTLISYTNSSISREIDPINPRKPPKSSLSKQLQRLQDPFSLPQIQPRNQQKQSLDHEEEEEVEAQEGFEKPQLGFLQFDLTGPFVPLVLSSDDEVPVIQVPASINHRLLEHQREGVKFLYNLYKHNHGGVLGDDMGLGKTIQTIAFLAAMFGKDGECGDSTILKGNQMGKKGPVLIVCPTSVIHNWESEFSKWATFSVSVYHGANRDLILDKLEAHGVEILITSFDTYRIHGSILSEVPWEIVVIDEAHRLKNEKSKLYTACLEIKTCKRIGLTGTIMQNKIMELFNLFDWVAPGCLGTREHFREFYDEPLKHGQRSTAPERFVRVADERKQHLVAVLHKYLLRRTKEETIGHLMMGKEDNVVFCAMSELQKRVYTRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPNGVIWSYLHRDNPDGCDSCPFCLVLPCLVKLLQISNHLELIKPNPRDDPDKQRKDAEFASAVFGTDIDLVGGNTQSESFMGLSDVKHCGKMRALEKLMLSWVSHGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRYGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAISGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIELHENQRQDHGHNRSTKMDLSELGSYFVQSKEAIETVSSAPESRKPKYFKSDTTLEDLGIVYAHRNEDIVNFGPTIQGKEEASVAQHDGQRQSHIPVAEKRRPNGVSRKENASSAKDWKKREFSLLAQFMGMKEVEFSKWLLAAAPSEREKVLQDYKKRKKKIPNG* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0328 905 PANTHER SNF2/RAD54 FAMILY MEMBER 53 892 - -
Vvi12g0328 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 394 IPR027417 -
Vvi12g0328 905 SMART helicmild6 579 662 IPR001650 -
Vvi12g0328 905 FunFam Switch 2 139 393 - -
Vvi12g0328 905 Gene3D - 136 393 IPR038718 -
Vvi12g0328 905 Pfam SNF2-related domain 173 433 IPR000330 GO:0005524|GO:0140658
Vvi12g0328 905 MobiDBLite consensus disorder prediction 62 81 - -
Vvi12g0328 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 715 IPR027417 -
Vvi12g0328 905 CDD SF2_C_SNF 544 673 - -
Vvi12g0328 905 Gene3D - 406 761 IPR027417 -
Vvi12g0328 905 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 344 IPR014001 -
Vvi12g0328 905 SMART ultradead3 153 351 IPR014001 -
Vvi12g0328 905 MobiDBLite consensus disorder prediction 88 115 - -
Vvi12g0328 905 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 553 706 IPR001650 -
Vvi12g0328 905 Pfam Helicase conserved C-terminal domain 550 662 IPR001650 -
Vvi12g0328 905 MobiDBLite consensus disorder prediction 832 853 - -
Vvi12g0328 905 MobiDBLite consensus disorder prediction 818 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0328 Vvi-Chr12 4227744 4234193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0328 177 692 RAD5 or RAD16-like Gene Family AT1G02670 24.687 2.55e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi12g0328 SNF2_N 6.7e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0328 K20098 - vvi:100259230 1818.51