Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0325 ATGGGCACCGGCGGAAATGCGGAATTTGGGTGGTTTGGGAGGAGGGGGAGGCTAGGGTTTGCGTTTCGGGTGGTTTTGGGGTTGTGGGTCGTGTTGGCCGTTCTTCGGCCGGTGACGGGTCTGAGACCTTTAAGGGACAGGGCTCATTCGTGGGGCGATGAGTGGTTATATATTAGAAAAGATGAGAATGCACTGGGTCCGTTTTCCTATTGGAACATTACAGGAACATACAAAGGATCTTGGAGGTTCCTGGATTCCACAAATAGCTCTGCTAGGTTTCCAGATTTTGGGAAATCCAGTGGCAATTCTATCATTGAATTAGTTAGCTCACCAACAAAAATAACAGGTGTACATTATGTTCAGGGGGTGATTATATTCCATGATGTGTTTGACAATGAACATGAAGTTGGTGGTTCTCAAATCAGGGTAGAAGGTGTATATATATGGCCTTTTAGACAACTTCGAATGGTAGCCAACAGTGGAAAAGAGGGAGAGTTGAGCCAGGAAGAAGAATATATATTGTCTAATCCATATCACTTGCTTGGAGTTTTCTCGTCACAGGTGTTCCAAGAATCTCCCCGAGAGAAGATATGGAGAAAGCGGCATTCACCAATTTATGAGATGGAGAAACGTTGTAATATTGAAATTGCGGCCCAAATTTCACGTGTCTCATCCACCCAAAATGATGGAGATCGTGATCGTTATCACTTAGAAGGATTGATGGAGAGTCCTTCCGTGGATGATGATGGAGATTGCTTCTCTCCCTTACTATTAAATGCTACTTCTGTCAACATTGAGGCCTACTACAACAAGGCAGTTAACTATACGTTGATGGTCACCTTTGTCTCTTTTCTTCAAGTTCTTTTGTTAATTCGGCAAATGGAACATAGCAACACTCAATCGGGGGCTGCCAAAGTTTCGATTTTAATGATTGGGCAACAAGCCATTATGGATGCTTATCTCTGCCTTTTACATCTGACTGCCGGAATACTAGTTGAGTCCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATTTTTGAGATGAGATACCTTCTTGCCATATGGAAGGCAAGCAGACCTATGAATAACGGAGAAGGTTGGGAGACAATGAGGCGTGAGCTTTCTGTTCTGTATAGCCGTTTCTATGGAATCCTTTTGGGAGGCATTCTGGTTATGTATGAGTTTCATAATTTTCTGCGGCCTATTCTTCTCCTTATGTACTCCTTTTGGATACCTCAAATAATTACTAATGTTATTCGTGATTCAAGAAAGCCATTGCATCCTCATTATATCTTAGGCATGACTGTTACTCGGCTAGCAGTTCCATTATATATGTTTGGCTGCCCTAACAACTTCATGCGCATTGAACCTAGCAAGAGTTGGTGTATTTGTTTGGGTATATTTATGGGACTTCAAGCATCAATTCTTCTTCTTCAGCACTATCTTGGATCTCGGTGTTTCATTCCTCGGCAGATCCTACCTGAGAAATATAGCTACTACAGACGGTCTAATCAGGATACAAATCATGTGACGGACTGTGTCATTTGCATGACCACCATTGATATCACACATCGTTCTAATGAGTGCATGGTGACGCCATGTGATCATTTTTTCCATTCTGGTTGTTTACAAAGGTGGATGGATATAAAAATGGAATGCCCAACATGCCGGCGTCCACTGCCACCAGCCTAA 1713 0.4256 MGTGGNAEFGWFGRRGRLGFAFRVVLGLWVVLAVLRPVTGLRPLRDRAHSWGDEWLYIRKDENALGPFSYWNITGTYKGSWRFLDSTNSSARFPDFGKSSGNSIIELVSSPTKITGVHYVQGVIIFHDVFDNEHEVGGSQIRVEGVYIWPFRQLRMVANSGKEGELSQEEEYILSNPYHLLGVFSSQVFQESPREKIWRKRHSPIYEMEKRCNIEIAAQISRVSSTQNDGDRDRYHLEGLMESPSVDDDGDCFSPLLLNATSVNIEAYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNGEGWETMRRELSVLYSRFYGILLGGILVMYEFHNFLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGMTVTRLAVPLYMFGCPNNFMRIEPSKSWCICLGIFMGLQASILLLQHYLGSRCFIPRQILPEKYSYYRRSNQDTNHVTDCVICMTTIDITHRSNECMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0325 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Vvi12g0325 570 FunFam E3 ubiquitin-protein ligase, putative 506 570 - -
Vvi12g0325 570 PANTHER RING ZINC FINGER PROTEIN 127 569 - -
Vvi12g0325 570 SUPERFAMILY RING/U-box 519 569 - -
Vvi12g0325 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Vvi12g0325 570 CDD RING-H2_TUL1-like 514 569 - -
Vvi12g0325 570 SMART ring_2 520 563 IPR001841 -
Vvi12g0325 570 Pfam Ring finger domain 519 564 IPR001841 -
Vvi12g0325 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 570 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0325 519 568 C3H Transcription Factor Family AT1G53010 37.255 2.75e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0325 K23788 - vvi:100243855 1148.27