Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0323 ATGGCTTCATCTTCTTCTTCCATGGCAACCCATTTCTTAATCCTCCTGCTCCTACAATTTTCTTTCTTATTCAACAATCTGGCTGCAAAACATGGCAGCCCTGCTACCCGTCATCACCGTGCCCACAACCGCCCTCACAACCACTCCCCCACATCAAACCCCAGACTTCAACAAGCTTACATTGCCCTCCAAGCATGGAAGCGCGTAATCTACTCTGACCCCAACAAATTCACCTCCAACTGGGTTGGTCCCTCGGTCTGCAGCTACAAGGGTGTGTACTGCACAACAGCTCTAGATGACCCCAAAATCAAAGTTGTCGCTGGTATTGACCTCAATCTTGCGAACATAGCCGGCTCCCTCCCTGATGAGCTCGGTCTCCTGACCGACCTGGCCCTGCTCCATCTAAACTCCAACCGCTTCTGTGGAATCATCCCAGAAACCTTTGCCAACCTCACTCTCCTATTTGAGCTTGATATCAGCAACAACAGATTTGTTGGCCCCTTCCCTTCAGTTGTGGTCTCTCTTCCTACCCTGAAATTTCTCGACATTCGCTTCAATGAATTCGAGGGGGCATTGCCTCCTGATGTTTTCAACAGAGGCCTTGATGCAATCTTTGTTAATAACAACCTCTTCAGTTCAGTAATACCATCAACTTTCGGCACGAGCTCGGCTTCTGTAGTGGTATTTGCCAACAACAAATTTGGAGGTTGCCTGCCTCCAAGTATTGCAAATTTTGCAGATACCTTAGAGGAGCTTTTATTGTTCAACACCAGCTTGTCAGGTTGTTTGCCACAGGAAATCGGTTTCCTATACAAACTGAGGGTGCTGGATGTGAGCTTCAACAAGGTAGTAGGCACCATACCCTACAGCCTTGCAGGATTAGCTCACTTGGAGCAACTGGTCTTAGGCCACAACATGATGACTGGGAACATACCTGAGGGGATTTGCATTCTCCCAAATTTGATGAACTTCACATTCTCTTACAACTTCTTCTGCGAGGAGGAGGGCATTTGCCAGAACCTGACATCAAATGGGATCAAGTATGACGATCGGAGAAACTGTTTGCCGGATAAACCACTTCAGAGGAGCAAGAAGCAATGTGAGGCTGTATACAAACACCCTGTTGACTGCCTTGAGCACCACTGCAGTGGAGGTGGTGGTGGTACAGGAGCTGCTGTTGCTCCAATGCATGCAGCATCATCTCTGGCTTCACCTCCCACCCATTCCTAG 1230 0.4846 MASSSSSMATHFLILLLLQFSFLFNNLAAKHGSPATRHHRAHNRPHNHSPTSNPRLQQAYIALQAWKRVIYSDPNKFTSNWVGPSVCSYKGVYCTTALDDPKIKVVAGIDLNLANIAGSLPDELGLLTDLALLHLNSNRFCGIIPETFANLTLLFELDISNNRFVGPFPSVVVSLPTLKFLDIRFNEFEGALPPDVFNRGLDAIFVNNNLFSSVIPSTFGTSSASVVVFANNKFGGCLPPSIANFADTLEELLLFNTSLSGCLPQEIGFLYKLRVLDVSFNKVVGTIPYSLAGLAHLEQLVLGHNMMTGNIPEGICILPNLMNFTFSYNFFCEEEGICQNLTSNGIKYDDRRNCLPDKPLQRSKKQCEAVYKHPVDCLEHHCSGGGGGTGAAVAPMHAASSLASPPTHS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0323 409 Pfam Leucine rich repeat 130 187 IPR001611 GO:0005515
Vvi12g0323 409 Pfam Leucine rich repeat N-terminal domain 60 94 IPR013210 -
Vvi12g0323 409 FunFam Leucine-rich repeat extensin-like protein 1 60 221 - -
Vvi12g0323 409 Gene3D Ribonuclease Inhibitor 58 352 IPR032675 -
Vvi12g0323 409 SUPERFAMILY L domain-like 58 341 - -
Vvi12g0323 409 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 15 395 - -
Vvi12g0323 409 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 246 334 - -
Vvi12g0323 409 MobiDBLite consensus disorder prediction 34 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0323 Vvi-Chr12 4178065 4179294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0323 52 408 Trihelix Transcription Factor Family AT2G15880 53.221 1.78e-135 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0323 - - vvi:104880817 787.719