Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0320 ATGGAAGAGAATAAGATTTGCGTTGGTCAGTCTTTGCTTTATGAATCATATGCCTTGTTTCTTGAAGCAAAAGGGAAGTTGCTCGATGCGTTTATGGTTTACCAAATTGGGGTTTCGAGGAAGGCAGAGCCCCTTGATAAGCTGAAAAAGGCACAAGCCTTATTCATGGATAGAATGAAGGAGATTGTGAATGCTTGCTCACTCGAGCCGATTGATGATGGTGAATCTGCTGAGCTTGGAACAAGTTTTACTAATCCATGGTCAATCTCCACAATTAAAGATCTATTGCAGAAGAAGAAACCTCAAATCTTGAAATATGATGGATACCATCCAAGTACTAAAGCTTATTCAAGAAAAGTGGCTCTATCTTCTTTGCAGAATTCATCAAGGAATAAGATCATTGAGATAGGTGGATATAAGTACCAGATCAAGGGATGTGCTGGTAAAGGTGGATTTGCTCAAGTATTCAAAGCATATGTCAACTATAATCCTGATGAAGTTGTTGCATTGAAAATACAAAAGCCTGCTTTCCCATGGGAATTCTACATGTATCGCCAACTTGATAAACGTATCCCAGACAAGGAAAGGTCAAGCTTTGGCTTTGCTCACAGATTACATCTCTATTCTGACTGTAGCATACTAGTTAGTGAATATCTAGCTCATGGTACACTTCAGGATGCCATAAACTCTTATGTAGTTATTGGTGGGTCCATGGAAGAAGTGTTGTGTATTTATTACACTATAGAGATGCTCTACATGCTGGAAACTATCCATAGTGTTGGCATCATTCATGGTGATTTCAAGCCTGATAATCTGCTTATTCGTTATAGCAGGCATGATCTTACAGAAGAAGAGTTTCACGAGCGATGTGGCCCTTGGCGTGATCAGGGACTTTGTCTTGTTGACTGGGGTAGGGGGATAGACCTAAGTCTCTTTCCTAGCAATACAGAGTTTAAAGGAGACTGTCGGACATCTGGTTTTCGGTGTGTGGAAATGCAAGAGCACAAGCCATGGAAATTTCAGGTAGACACTTATGGCCTTTGTGTTATTGTCCACATGATGCTGCACAATTCATATATGGCAATTGAGAAGAAACCATCTTTTGATGGTGGCTATATTTATCAACCTAAATCACCTTTTAAGCGATATTGGAATGTTCAGCTATGGAAGAATCTGTTTACAAAACTGCTGAACTCAAGTCCCCACGAGGATCACAGTAGGTTGCTGCAGAATTTGAGGGAGTCCTTCCAGGATTACATGTGCTCAAACCCTCAGCTGATAAAGAAACTCAAGCATTTACTAGTGAAGCAAAGGGCTTCCTTGTGTTGTGCTTAG 1335 0.4052 MEENKICVGQSLLYESYALFLEAKGKLLDAFMVYQIGVSRKAEPLDKLKKAQALFMDRMKEIVNACSLEPIDDGESAELGTSFTNPWSISTIKDLLQKKKPQILKYDGYHPSTKAYSRKVALSSLQNSSRNKIIEIGGYKYQIKGCAGKGGFAQVFKAYVNYNPDEVVALKIQKPAFPWEFYMYRQLDKRIPDKERSSFGFAHRLHLYSDCSILVSEYLAHGTLQDAINSYVVIGGSMEEVLCIYYTIEMLYMLETIHSVGIIHGDFKPDNLLIRYSRHDLTEEEFHERCGPWRDQGLCLVDWGRGIDLSLFPSNTEFKGDCRTSGFRCVEMQEHKPWKFQVDTYGLCVIVHMMLHNSYMAIEKKPSFDGGYIYQPKSPFKRYWNVQLWKNLFTKLLNSSPHEDHSRLLQNLRESFQDYMCSNPQLIKKLKHLLVKQRASLCCA* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0320 444 ProSiteProfiles Protein kinase domain profile. 141 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0320 444 SUPERFAMILY Protein kinase-like (PK-like) 139 413 IPR011009 -
Vvi12g0320 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vvi12g0320 444 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 1 59 IPR015661 GO:0007094
Vvi12g0320 444 FunFam Mitotic checkpoint serine/threonine-protein kinase BUB1 139 441 - -
Vvi12g0320 444 Pfam Protein kinase domain 147 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0320 444 Gene3D - 1 68 - -
Vvi12g0320 444 SMART serkin_6 141 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0320 444 Gene3D Transferase(Phosphotransferase) domain 1 139 441 - -
Vvi12g0320 444 ProSiteProfiles BUB1 N-terminal domain profile. 1 82 IPR013212 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0320 Vvi-Chr12 4129830 4133378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0320 141 279 AGC Kinase Gene Family AT3G17850 30.921 5.12e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Vvi12g0320 Pkinase 4.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0320 K02178 - vvi:100260743 920.228