Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0319 ATGGAAGCTAAGAAGATGGTGAAGAAGGAGATGGAGGGCACTGAGGAGGTTGATGAGGATGATCAATTGGGCTGTTCTGAGGATGACAAGAAGAAGAAGGCCGCAGCTGGGGGCTCCGGGAAGAAGGCCGCCGCCGCGATGAGGTGCTGTCAAGCTGAGAGGTGCACTGCTGATCTCACTGATGCTAAGCAGTACCATAGGAGGCATAAGGTCTGTGAGCATCATGCCAAGGCTCAAGTGGTGGTTGTGGGCGGAATCCGGCAGCGCTTCTGTCAGCAATGCAGCAGATTCCATGAGCTCTCAGAGTTTGATGAAGCCAAAAGAAGTTGCCGCAGGCGTTTGGCAGGACACAATGAAAGGCGCAGAAAGAACTCAGCTGATCATGCAGAAGGCTCAAGCCGGAAAGGCACTCAGTTGAAGGAAATCGTTTGTGGGCAGGTTGATGATAGAGGCAGAATTCAGATTACAATCCAAGAGAATGCCGCTTACAAGCATTTCCAGATCAGATGA 510 0.5157 MEAKKMVKKEMEGTEEVDEDDQLGCSEDDKKKKAAAGGSGKKAAAAMRCCQAERCTADLTDAKQYHRRHKVCEHHAKAQVVVVGGIRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKNSADHAEGSSRKGTQLKEIVCGQVDDRGRIQITIQENAAYKHFQIR* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0319 169 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 129 IPR044817 GO:0003677
Vvi12g0319 169 MobiDBLite consensus disorder prediction 120 134 - -
Vvi12g0319 169 SUPERFAMILY SBT domain 48 128 IPR036893 GO:0003677|GO:0005634
Vvi12g0319 169 MobiDBLite consensus disorder prediction 115 134 - -
Vvi12g0319 169 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Vvi12g0319 169 Pfam SBP domain 50 123 IPR004333 GO:0003677
Vvi12g0319 169 MobiDBLite consensus disorder prediction 1 41 - -
Vvi12g0319 169 FunFam Squamosa promoter-binding-like protein 14 41 111 - -
Vvi12g0319 169 Gene3D - 45 111 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0319 Vvi-Chr12 4108630 4110069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0319 6 169 SBP-box Gene Family AT3G15270 51.205 2.85e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi12g0319 SBP 5.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0319 - - vvi:100245363 330.487