Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0318 ATGCCCTTGAAGGACACAAGGCCGTCCACCAAGCCCACATGTGCTTTTCTTTCTCCTTCCCTCTCTCGCTCTCTCCCAAACCCCACCATCACCACCCCCAACACCACCACCACCACGGCCGACGTCGACGGGGATCATAGGAGCCGCCACGACAAAGCTCTCTTCTCACCAATGCCTGCCCAGAAGCGTTCCGTCTCCGAAAATCTGGTCAGCGGCGGAGTCGACGACGACGACGAGGAGGAAAGAGACGAAGATTCTCTCCACCAACACTTCCATCGGAAGCAGCCGCGGCACGTCGAACCAGACCAAGTTCAGCCCCAAGATCACCACCACCAACACCCACAGCTCCACCAAGAAGAGGATTCCGATGAAAACCCTTCCTCTAGCACTGAAGAAAAACCAGAATTTGTCTTTGTAGGACTGCCAGACATTCGTAAAGATGTACAATGTCCAATATGTCTTGGGATCATTAAGAAAACACGTACTGTAATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAATCAATGAGACTGGGGAATAATGAGTGTCCTGCTTGCCGCACACATTGTGCCAGCCGACGTTCCCTGAGAGATGATCCAAACTATGATGCCCTAATTGCAGCTTTATATCCAGATATTGATAAGTATGAAGAGGAGGAACTGGCTTTTCATGAAGAGGAGCAGACTCGCAATAAGCAGATTCAAGCATCAATTGCTCAAATTCTTCAAAGACAATCAGAAGCGCTAAATAGGAAACGCACACTGGGTAAAGATATAGCAGGTCCATTTATGACAAGATCACAGCGCAATTATCGGAATGCTTATTCAAGGAGGAGGAAAAATGGTCGAGGTTCTGATCTTCAAGGATCTGATGATAATGAGGATGAGAATGATAATGATGGAGGCAAAGGTTCATCTTCTGCTGAGGAGCGTTCTACAGAAGTCAAGCGGAGAAGGTACAAGAGACGGGCAGGAATTCGACTCATACAACCTTCTTCTTCTTCAGTAGCTAACTCAGATGGTGGATGCATTGAAAATGATTTAGAAGTGAATAGAGAAAGCCGAGGCTTTTCTCCTGGACTAGTGTGGAATCCTGAAATGCTTGCTTGGGGCAGGGGTGGTGCTCGGAGTCATACACGACATGGCAGTAGCAGTGGCTGCAATCATAAGAGTGCCCGGAGTACCCGCCTGTCCAAGTTGGTTGATTATCTTCGGAGCTTAGGGGAAAATGATAATGAGTTAGATGTTCATCTCATGCTTATTTCTTTGGATAAAGAAAGTACACCAAGTTTGCAGGAGCCATATCTTTGCTGCAGGCCAACCTTGTCAGTGAGACACCTCTGTGAATATGTTGCTCTCCAGACACCTTTGCGTGCGGAAGAAGTTGAAATATTGGTGGTGAAAGGGTGTCACAATGACTATCAGCCCTTCCCAAACCCTTCAACCTCAGTAGATGATCTGAATCCCGACCCTATAGTGATTGATCCATCCAAAGATGAGCTGCAAATTTTGGAGGGGCAAGAAACTCTGGTGGGGCTTCAAGCCAATGGCACTTCCTGTAGAAACCAGTTGGTCCTAGCATATCGGCAGAAGGGGGATAGTTAG 1614 0.4771 MPLKDTRPSTKPTCAFLSPSLSRSLPNPTITTPNTTTTTADVDGDHRSRHDKALFSPMPAQKRSVSENLVSGGVDDDDEEERDEDSLHQHFHRKQPRHVEPDQVQPQDHHHQHPQLHQEEDSDENPSSSTEEKPEFVFVGLPDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEQTRNKQIQASIAQILQRQSEALNRKRTLGKDIAGPFMTRSQRNYRNAYSRRRKNGRGSDLQGSDDNEDENDNDGGKGSSSAEERSTEVKRRRYKRRAGIRLIQPSSSSVANSDGGCIENDLEVNRESRGFSPGLVWNPEMLAWGRGGARSHTRHGSSSGCNHKSARSTRLSKLVDYLRSLGENDNELDVHLMLISLDKESTPSLQEPYLCCRPTLSVRHLCEYVALQTPLRAEEVEILVVKGCHNDYQPFPNPSTSVDDLNPDPIVIDPSKDELQILEGQETLVGLQANGTSCRNQLVLAYRQKGDS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0318 537 MobiDBLite consensus disorder prediction 1 133 - -
Vvi12g0318 537 MobiDBLite consensus disorder prediction 11 41 - -
Vvi12g0318 537 MobiDBLite consensus disorder prediction 256 328 - -
Vvi12g0318 537 SUPERFAMILY RING/U-box 139 221 - -
Vvi12g0318 537 Pfam Zinc finger, C3HC4 type (RING finger) 149 189 - -
Vvi12g0318 537 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Vvi12g0318 537 SMART ring_2 150 189 IPR001841 -
Vvi12g0318 537 MobiDBLite consensus disorder prediction 302 319 - -
Vvi12g0318 537 ProSiteProfiles Zinc finger RING-type profile. 150 190 IPR001841 -
Vvi12g0318 537 CDD RING-HC_RING1-like 147 212 - -
Vvi12g0318 537 PANTHER OS11G0578200 PROTEIN 58 534 IPR044592 -
Vvi12g0318 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 220 IPR013083 -
Vvi12g0318 537 MobiDBLite consensus disorder prediction 84 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0318 Vvi-Chr12 4097838 4105274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0318 143 213 C3H Transcription Factor Family AT3G23060 33.784 1.60e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0318 K10695 - vvi:100267677 922.924