Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0316 ATGTCGAAGCATATAACGCATGGATTTCACTTGGTGAAAGGCAAATCAAATCATGAAATGGAAGATTGTTTGGTTTCTGAATTCAAGCAAGTGGAAGACCATGAGTTGGGTTTATTTGGAATATTCGATGGGCATTTGGGCCATGATGTTTCAAATTACTTGAAAACTCATCTGTTTGACAATATTCTGAAGGAGCATACTTTCTGGACCGAAACAGAGAATGCTATAAAGAGAGCTTACCGTAAAACTGACATTGAGATACTGGACAAATCATTGTACTTGGGAAGAGGAGGGTCAACTGCAGTAACAGCAATACTAATCAATGGTGAGAGGTTGGTAGTGGCAAATGTGGGAGATTCTCGGGCTGTTATATGCAAGAATGGTGAGGCTAAACAGCTATCAGTTGATCATGAGCCAAGCAAGGAAAGAACGATGATTGAAAGGCGGGGTGGTTTTGTATCAAACCTTCCAGGTGATGTACCACGTGTTGACGGACAACTTGCAGTGGCAAGGGCATTTGGTGATAAGAGCTTGAAGCTACACCTTAGCTCAGAACCAGATGTGGCAGTGGAGCCCATAACTACTGGAACAGAGTGCATTATTCTGGCAAGTGATGGCTTATGGAAGGTGATGTCAAACCAGGAGGCGGTGGATTGCATCAAACACATAAAGGATGCTCAGTCAGCAGCAAAGCGATTGACTGACGAGGCTCTTTCTAAGAAAAGCAAGGATGATATCTCCTGCATTGTAGTAAAGTTTCAGTGA 765 0.4288 MSKHITHGFHLVKGKSNHEMEDCLVSEFKQVEDHELGLFGIFDGHLGHDVSNYLKTHLFDNILKEHTFWTETENAIKRAYRKTDIEILDKSLYLGRGGSTAVTAILINGERLVVANVGDSRAVICKNGEAKQLSVDHEPSKERTMIERRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDVAVEPITTGTECIILASDGLWKVMSNQEAVDCIKHIKDAQSAAKRLTDEALSKKSKDDISCIVVKFQ* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0316 254 CDD PP2Cc 13 253 IPR001932 -
Vvi12g0316 254 ProSiteProfiles PPM-type phosphatase domain profile. 6 253 IPR001932 -
Vvi12g0316 254 PANTHER PROTEIN PHOSPHATASE 7 253 IPR015655 GO:0004722|GO:0006470
Vvi12g0316 254 SMART PP2C_4 1 251 IPR001932 -
Vvi12g0316 254 Pfam Protein phosphatase 2C 16 246 IPR001932 -
Vvi12g0316 254 Gene3D - 3 254 IPR036457 -
Vvi12g0316 254 FunFam Probable protein phosphatase 2C 39 1 254 - -
Vvi12g0316 254 SUPERFAMILY PP2C-like 4 253 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0316 Vvi-Chr12 4075204 4076519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0316 1 254 PP2C-type Phosphatase Gene Family AT4G28400 74.803 2.51e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0316 K17506 - vvi:100247283 510.76