Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0315 ATGAGTGGGGTTTCTGCTGACCAACACAAGTTTTTCCTCTCCCACCAACTCTTCAACAAGAAAACCATTGATATTCCGCCCAGAAAGCTTCTCAGCCGCCGAGCCAACTCTCTTGAGAGCTCTGATATCTTCTCCGACTCCCCCAAGGCTCTCGGTGCGGCTGGAGAGACCCTCTTTCAGAAGTTCTTGCCGTTCAACTGCGGCGACGACGATGAGTCCGACCCTTATTCGTCAGATCATTTTCGGATGTTTGAGTTTAAGGTTCGCCGGTGCACTCGCAGCCGCAGCCACGACTGGACTGATTGTCCCTTTGCTCATCCCGGGGAGAAGGCTCGCAGGAGGGACCCCCGGAGGTACCATTACTCAGGGACTGTGTGCTCGGAGTACCGGCGAGGTGGGTGTAGTAGAGGCGATAACTGCGAGTTTTCACATGGGGTTTTCGAGTGCTGGCTACACCCAGCTCGTTACAGGACTGAGGCCTGCAAAGATGGAAAGAATTGTAAGAGAAAGGTCTGTTTCTTCGCTCATTCCCGTAAGCAGCTTCGGGTATTGCCTTTGCATTCACAAACCAATGGAACCCCAGATGTAAAGTTCTCGCCTCTGAACCATTGCTGCGTGTTTTGCCACTCTGCAACTTCTCCCACTTCTACCTTAATGGGTACGTCCCATTTTTCGCCGCCGGCGTCGCCGTCTCCCCCTCTGTCTCCGGTGAACGCCACATATTCTCCAATTTCTCGTTACAATGATCGCTCAACAAGCCTAGATTCGAGTAATATGAGCCAATTTCGACATGTAATGTTGAGCTACAACAAGGACGTTGTTGCGGAGCTGATGAGCTCTTTGGAAGCCATAAACATCAACGAAGCTTCACCCGAACATACCAACCCATTGGTCGACTCTTGTTTCGCCAGTGAAGATCATCAGCAGTTTAGTCTCTCTCCATCAATCCCAAATGCTTCTGGGTCCAGGCATTTTTTCAATGGAGACTGTTCGAGCAAAAGCTCCATTGAGGATAAGCTCAGTAGTGAAAATGGCAGCTGGGCTTGTCCTGATCTTGGGTGGGTCAACGATCTGTTGATGTAG 1083 0.5078 MSGVSADQHKFFLSHQLFNKKTIDIPPRKLLSRRANSLESSDIFSDSPKALGAAGETLFQKFLPFNCGDDDESDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCSEYRRGGCSRGDNCEFSHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSRKQLRVLPLHSQTNGTPDVKFSPLNHCCVFCHSATSPTSTLMGTSHFSPPASPSPPLSPVNATYSPISRYNDRSTSLDSSNMSQFRHVMLSYNKDVVAELMSSLEAININEASPEHTNPLVDSCFASEDHQQFSLSPSIPNASGSRHFFNGDCSSKSSIEDKLSSENGSWACPDLGWVNDLLM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0315 360 SUPERFAMILY CCCH zinc finger 122 145 IPR036855 GO:0046872
Vvi12g0315 360 Gene3D - 115 192 - -
Vvi12g0315 360 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Vvi12g0315 360 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Vvi12g0315 360 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Vvi12g0315 360 PANTHER UNKEMPT FAMILY MEMBER 58 359 IPR045234 -
Vvi12g0315 360 Pfam CCCH-type zinc finger 125 145 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0315 Vvi-Chr12 4071337 4072419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0315 70 281 C2H2 Transcription Factor Family AT5G12850 45.133 9.97e-54 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi12g0315 zf-CCCH 6.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0315 K23047 - vvi:100257395 752.281